Publications 2014 – University of Copenhagen

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Publications 2014

Alexanderson H, Backman J, Cronin TM, Funder S, Ingólfsson O, Jakobsson M, Landvik JY, Löwemark L, Mangerud J, März C, Möller P, O'Regan M, Spielhagen RF. 2014. An Arctic perspective on dating Mid-Late Pleistocene environmental history. Quaternary Science Reviews 92, 9-31. http://dx.doi.org/10.1016/j.quascirev.2013.09.023 (PR)(CO)

Alfaro-Núñez A and Gilbert MTP (2014). Validation of a sensitive PCR assay for the detection of Chelonid fibropapilloma-associated herpesvirus (CFPHV) in latent turtle infections. Journal of Virological Methods 206:38–41 (PR)

Alfaro-Núñez A, Frost MB, Bojesen AM, Rasmussen I, Zepeda-Mendoza L, Olsen MT and Gilbert MTP (2014). Global distribution of Chelonid fibropapilloma-associated herpesvirus among clinically healthy sea turtles. BMC Evolutionary Biology 14:206 (PR)(OA)

Allentoft ME, Heller R, Oskam CL, Lorenzen ED, Hale ML, Gilbert MTP, Jacomb C, Holdaway RN, Bunce M (2014). Extinct New Zealand megafauna were not in decline before human colonization. PNAS, vol 111, 4922-4927. (PR)

Andresen CS, Kjeldsen KK, Harden B, Nørgaard-Pedersen N & Kjær KH. Outlet glacier dynamics and bathymetry at Upernavik Isstrøm and Upernavik Isfjord, North-West Greenland. 2014 In : Geological Survey of Denmark and Greenland Bulletin. 31, p. 79-82 4 p. (PR)(OA)

Bangsgaard P. 2014: Animal Deposits at H29, A Kerma Ancien cemetery in the northern Dongola Reach. Sudan & Nubia: The Sudan Archaeological Research Society Bulletin vol. 18, 20-25 (PR)

Bangsgaard P. 2014: A commentary to the faunal remains from Tepe Guran. In: P. Mortensen, Excavations at Tepe Guran, The Neolithic Period, Acta Iranica 55. Peeters Publishers, pp. 107-114 (PR)

Bangsgaard P. Nubian Faunal Practices - Exploring the C-Group “Pastoral Ideal” at Nine Cemeteries. In Anderson & Welsby (eds.): Fourth Cataract and Beyond, Proceedings of the 12th International Conference for Nubian Studies, British Museum Publications on Egypt and Nubia 1, Peeters Publishers, pp. 347-356, 2014. PR

Bohmann K, Evans A, Gilbert MTP, Carvalho GR, Creer S, Knapp M, Yu DW, de Bruyn M. Environmental DNA for wildlife biology and biodiversity monitoring. Trends in Ecology & Evolution 08/2014; (PR)(OA)

Bohmann K, Evans A, Gilbert MTP, Carvalho GR, Creer S, Knapp M, Yu DW, de Bruyn M. Erratum: Environmental DNA for wildlife biology and biodiversity monitoring. Trends in Ecology & Evolution 29, (2014), 358 – 367, 01/2014;

Brandt LØ, Schmidt AL, Rast-Eicher A, Mannering U, Kelstrup CD, Olsen JV, Cappellini E. (2014). Species identification of skin objects from Danish bogs. PLoS ONE 9(9): e106875. doi:10.1371/journal.pone.0106875

Brown TA, Cappellini E, Kistler L, Lister DL, Oliveira HR, Wales N, Schlumbaum A. (2014). Recent advances in ancient DNA research and their implications for archaeobotany. Vegetation History and Archaeobotany 10.1007/s00334-014-0489-4.

Cappellini E, Collins MJ, Gilbert MTP. (2014). Unlocking Ancient Protein Palimpsests. Science 343, 1320-22. (PR)

Cardona A, Pagani L, Antao T, Lawson DJ, Eichstaedt CA, Yngvadottir B, Shwe MT, Wee J, Romero IG, Raj S, Metspalu M, Villems R, Willerslev E, Tyler-Smith C, Malyarchuk BA, Derenko MV, Kivisild T Cardona A, Pagani L, Antao T, Lawson DJ, Eichstaedt CA, Yngvadottir B, Shwe MT, Wee J, Romero IG, Raj S, Metspalu M, Villems R, Willerslev E, Tyler-Smith C, Malyarchuk BA, Derenko MV, Kivisild T (2014). Genome-wide analysis of cold adaptation in indigenous Siberian populations. PLoS One 9, e98076. (PR)(OA)

Clemente FJ, Cardona A, Inchley CE, Peter BM, Jacobs G, Pagani L, Lawson DJ, Antão T, Vicente M, Mitt M, DeGiorgio M, Faltyskova Z, Xue Y, Ayub Q, Szpak M, Mägi R, Eriksson A, Manica A, Raghavan M, Rasmussen M, Rasmussen S, Willerslev E, Vidal-Puig A, Tyler-Smith C, Villems R, Nielsen R, Metspalu M, Malyarchuk B, Derenko M, Kivisild T. A (2014). Selective Sweep on a Deleterious Mutation in CPT1A in Arctic Populations. Am J Hum Genet. 95, 584-589 (PR)

De Stephanis R, Giménez J, Esteban R, Gauffier P, García-Tiscar S, Sinding M-HS, Verborgh P. Mobbing-like behavior by pilot whales towards killer whales: a response to resource competition or perceived predation risk? Acta Ethologica (2014): 1-10. (PR)(OA)

Der Sarkissian C, Ermini L, Jónsson H, Alekseev AN, Crubezy E, Shapiro B & Orlando L. Shotgun microbial profiling of fossil remains. Molecular Ecology 23:1780-98, article first published online: 18 MAR 2014, DOI: 10.1111/mec.12690 (PR, CO)

Fabre PH, Vilstrup JT, Raghavan M, Der Sarkissian C, Willerslev E, Douzery EJ, Orlando L. (2014). Rodents of the Caribbean: origin and diversification of hutias unravelled by next-generation museomics. Biol. Lett. 10. (PR, OA, CO)

Gentry A, Lister AM, Roos A, Gilbert MTP, Cappellini E. (2014). The lectotype for the Asian elephant, Elephas maximus Linnaeus, 1758 (Mammalia, Proboscidea) and comments on “primary, secondary and tertiary syntypes” and “virtual lectotype designation”. Bulletin of Zoological Nomenclature 71, 1-6. (PR)(OA)

Gotfredsen AB. (2014). Birds in Subsistence and Culture at Viking Age sites in Denmark. In: Bejenaru L and Serjeantson D (eds.). International Journal of Osteoarchaeology. Special Issue on Bird and Archaeology: Recent research. 24 (3): 365-377. DOI: 10.10002/oa.2367 (PR)

Grayson DK, Meltzer DJ, Buikstra JE, Flannery KV, Fowler CS, Marcus J, O'Connell JF, Piperno DR, Sabloff JA, Smith BD, Thomas DH, Willerslev E, Zeder MA (2014). Early Americans: Respecting ancestors. Science (comment) 345, 390

Hope PR, Bohmann K, Gilbert MTP, Zepeda-Mendoza ML, Razgour O, Jones G. Second generation sequencing and morphological faecal analysis reveal unexpected foraging behaviour by Myotis nattereri (Chiroptera, Vespertilionidae) in winter. Frontiers in Zoology 01/2014; 11:39 (PR)(OA)

Holdaway RN, Allentoft ME, Jacomb C, Oskam CL, Beavan NR, Bunce M (2014). An extremely low-density human population exterminated New Zealand moa. Nature Communications, vol 5: 5436 (PR)

Jacomb C, Holdaway RN, Allentoft ME, Bunce M, Oskam CL, Walter R, Brooks E (2014). High-precision dating and ancient DNA profiling of moa (Aves: Dinornithiformes) eggshell documents a complex feature at Wairau Bar and refines the chronology of New Zealand settlement by Polynesians. Journal of Archaeological Science, vol 50, 24-30. (PR)

Jakobsson M, Andreassen K, Bjarnadóttir LR, Dove D, Dowdeswell JA, England JH, Funder S, Hogan K, Ingólfsson O, Jennings A, Krog-Larsen N, Kirchner N, Landvik JY, Mayer L, Mikkelsen N, Möller P, Niessen F, Nilsson J, O’Regan M, Polyak L, Nørgaard Petersen N, Stein R. 2014. Arctic Ocean glacial history. Quaternary Science Reviews. 92, 40-67. http://dx.doi.org/10.1016/j.quascirev.2013.07.033 (PR)(CO)(OA)

Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SYW, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, da Fonseca RR, Li J, Zhang F, Li H, Zhou L, Narula N, Liu L, Ganapathy G, Boussau B, Bayzid MS, Zavidovych V, Subramanian S, Gabaldón T, Capella- Gutiérrez S, Huerta-Cepas J, Rekepalli B, Munch K, Schierup M, Lindow B, Warren WC, Ray D, Green RE, Bruford M, Zhan X, Dixon A, Li S, Li N, Huang Y, Derryberry EP, Bertelsen MF, Sheldon F, Brumfield RT, Mello C, Lovell PV, Wirthlin M, Samaniego JA, Vargas Velazquez AM, Alfaro-Núñez A, Campos PF, Petersen B, Sicheritz-Ponten T, Pas A, Bailey T, Scofield P, Bunce M, Lambert D, Zhou Q, Perelman P, Driskell AC, Shapiro B, Xiong Z, Zeng Y, Liu S, Li Z, Liu B, Wu K, Xiao J, Yinqi X, Zheng Q, Zhang Y, Yang H, Wang J, Smeds L, Rheindt FE, Braun M, Fjeldsa J, Orlando L, Barker K, Jønsson KA, Johnson W, Koepfli K-P, O'Brien S, Haussler D, Ryder OA, Rahbek C, Willerslev E, Graves GR, Glenn TC, McCormack J, Burt D, Ellegren J, Alström P, Edwards SV, Stamatakis A, Mindell DP, Cracraft J, Braun EL, Warnow T, Jun W, Gilbert MTP, Zhang G (2014). Whole Genome Analyses Resolve the Early Branches in the Tree of Life of Modern Birds. Science 12, 1320-1331(PR)(OA)

Jarvis, ED; Mirarab, S; Aberer, A; Houde, P; Li, C; Ho, S; Faircloth, BC; Nabholz, B; Howard, JT; Suh, A; Weber, CC; Fonseca, RR; Alfaro-Núñez, A; Narula, N; Liu, L; Burt, D; Ellegren, H; Edwards, SV; Stamatakis, A; Mindell, DP; Cracraft, J; Braun, EL; Warnow, T; Jun, W; Gilbert, MTP; Zhang, G (2014). Phylogenomic analyses data of the Avian Phylogenomics Project. GigaScience, 27. November 2014, http://gigadb.org/dataset/101041. (PR)(OA)

Jónsson H, Schubert M, Seguin-Orlando A, Ginolhac A, Petersen L, Fumagalli M, Albrechtsen A, Petersen B, Korneliussen TS, Vilstrup JT, Lear T, Myka J, Lundquist J, Miller DC, Alfarhan AH, Alquraishi SA, Al-Rasheid KAS, Stagegaard J, Strauss G, Bertelsen MF, Sicheritz-Ponten T, Antczak DF, Bailey E, Nielsen R, Willerslev E, Orlando L. 2014. Speciation with gene flow in quids despite extensive chromosomal plasticity. PNAS 2014 111 (52) 18655-18660; published ahead of print December 1, 2014, doi:10.1073/pnas.1412627111 (PR)

Juras A, Dabert M, Kushniarevich A, Malmström H, Raghavan M, Kosicki JZ, Metspalu E, Willerslev E, Piontek J (2014). Ancient DNA Reveals Matrilineal Continuity in Present-Day Poland over the Last Two Millennia. PLoS One 9:e110839. (PR)(OA)

Kelly RP, Port JA, Yamahara KM, Martone RG, Lowell N, Thomsen PF, Mach ME, Bennett M, Prahler E, Caldwell MR, Crowder LB. Harnessing DNA to improve environmental management. Science, 27. June 2014, Vol. 344, Issue 6191, pp. 1455-1456. (PR)

Kerner S, Dann R and Bangsgaard P (eds.). 2014: Climate Change in Ancient Societies. Copenhagen: Museum Tusculanum Press, (341 pages)

Khan SA, Kjeldsen KK, Kjær KH, Bevan S, Luckman A, Aschwanden A, Bjørk AA, Korsgaard NJ, Box EJ, van den Broeke M, van Dam T, Fitzner A. Glacier dynamics at Helheim and Kangerdlugssuaq glaciers, southeast Greenland, since the Little Ice Age. Cryosphere, Vol. 8, 2014, s. 1497-1507. (PR)(OA)

Khan SA, Kjær KH, Bevis M, Bamber J, Wahr J, Kjeldsen KK, Bjørk AA, Korsgaard NJ, Stearns LA, van den Broeke MR, LiuL, Larsen NK, Muresan IS. Sustained mass loss of the northeast Greenland ice sheet triggered by regional warming. Nature Climate Change, 16.03.2014, s. 292-299. (PR)

Kjeldsen KK, Mortensen J, Bendtsen J, Petersen D, Lennert K & Rysgaard S. Ice-dammed lake drainage cools and raises surface salinities in a tidewater outlet glacier fjord, West Greenland. 16 Jun 2014. In : Journal of Geophysical Research: Earth Surface. 119, 6, p. 1310-1321 11 p. (PR)

Kjær KH, Bjørk AA, Funder SV, Groth-Hansen F, Houmark-Nielsen M, Khan SA, Kjeldsen KK, Korsgaard NJ, Larsen NK, Meldgaard M, Ries CJ, Tholstrup HH. The Greenland Ice Sheet: 80 years of climate change seen from the air. Copenhagen : Natural History Museum of Denmark, Faculty of Science, University of Copenhagen, 2014. 180 p.

Klimova A, Phillips CD, Fietz K, Olsen MT, Harwood J, Amos W, Hoffman JL. 2014. Global population structure and demographic history of the grey seal. Molecular Ecology, 23(16): 3999–4017 (PR)

Lea JM, Mair DWF, Nick FM, Rea BR, Weidick A, Kjær KH, Morlighem M, Van As D, Schofield JE. Terminus-driven retreat of a major southwest Greenland tidewater glacier during the early 19th century: insights from glacier reconstructions and numerical modelling. Journal of Glaciology, vol 60, issue 220, 2014, p.333-344. (PR)

Lecavalier B, Milne GA, Simpson MJR, Wake L, Huybrechts P, Tarasov L, Kjeldsen KK, Funder SV, Long AJ, Woodroffe SA, Dyke AS, & Larsen NK. A model of Greenland ice sheet deglaciation constrained by observations of relative sea level and ice extent. 2014. In : Quaternary Science Reviews. 102, p. 54-84 31 p. (PR)

Liu S, Lorenzen ED, Fumagalli M, Li B, Harris K, Xiong Z, Zhou L, Korneliussen TS, Somel M, Babbitt C, Wray G, Li J, He W, Wang Z, Fu W, Xiang X, Morgan CC, Doherty A, O’Connell MJ, McInerney JO, Born EW, Dalén L, Dietz R, Orlando L, Sonne C, Zhang G, Nielsen R, Willerslev E, Wang J. Population genetics reveal recent speciation and rapid evolutionary adaptation in polar bears. Cell, Vol. 157, Issue 4, 8. May 2014, pp. 755,757 (PR)

Malaspinas A-S,  Lao O, Schroeder H, Rasmussen M, Raghavan M, Moltke I, Campos PF, Sagredo FS, Rasmussen S, Gonçalves VF, Albrechtsen A,  Allentoft ME, Johnson PLF, Li M, Reis S, Bernardo DV, DeGiorgio M, Duggan AT, Bastos M, Wang Y, Stenderup J, Moreno-Mayar JV, Brunak S, Sicheritz-Ponten T, Hodges E,  Hannon GJ, Orlando L,  Price TD, Jensen JD, Nielsen R,  Heinemeier J, Olsen J, Rodrigues-Carvalho C, Lahr MM,  Neves VA, Kayser M, Higham T, Stoneking M, Pena SDJ, and Willerslev E (2014). Two ancient human genomes reveal Polynesian ancestry among the indigenous Botocudos of Brazil. Curr. Biol. 24, R1035-R1037 (PR)

Malaspinas A-S, Tange O, Moreno-Mayar JV, Rasmussen M, DeGiorgio M, Wang Y, Yong, Valdiosera CE, Politis GG,  Willerslev E, Nielsen R (2014). bammds: a tool for assessing the ancestry of low-depth whole-genome data using multidimensional scaling (MDS). Bioinformatics 30, 2962-2964 (PR)(OA)

Martin MD, Ho SYW, Wales N, Ristaino JB, Gilbert MTP. 2014. Persistence of the mitochondrial lineage responsible for the Irish potato famine in extant New World Phytophthora infestans. Molecular Biology and Evolution 31:1414-1420. (PR)

Martin M, Zimmer EA, Olsen MT, Foote AD, Gilbert MTP, Brush GS (2014). Herbarium specimens reveal a historical shift in phylogeographic structure of common ragweed during native range disturbance. Molecular Ecology, 23(7): 1701-1716 (PR)

Mourier T, Nielsen LP, Hansen AJ, and Willerslev E (2014). Transposable elements in cancer as a by-product of stress-induced evolvability. Front Genet. 2014; 5: 156. (PR)(OA)

Olalde I, Allentoft ME, Sánchez-Quinto F, Santpere G, Chiang CWK, DeGiorgio M, Prado-Martinez J, Rodríguez JA, Rasmussen S,  Quilez J, Ramírez O, Marigorta UM, Fernández-Callejo M, Prada ME, Encinas JMV, Nielsen R, Netea MG, Novembre J, Sturm RA,  Sabeti P, Marquès-Bonet T, Navarro A, Willerslev E & Lalueza-Fox C. Derived immune and ancestral pigmentation alleles in a 7,000-year-old Mesolithic European. Nature (2014) doi:10.1038/nature12960 (PR)

Olsen MT, Andersen LW, Dietz R, Teilmann J, Härkönen T & Siegismund HR. (2014). Integrating genetic data and population viability analyses for the identification of harbour seal (Phoca vitulina) populations and management units. Molecular Ecology, 23, 815-831. doi:10.1111/mec.12644. (PR)

Orlando L. 2014. A 400,000-year-old mitochondrial genome questions phylogenetic relationships amongst archaic hominins. Bioessays 36:598-605 (PR)

Orlando L, Willerslev E. 2014. Evolution. An epigenetic window into the past? Science 345:511-512. (PR)

Orlando L, Cooper A. Using ancient DNA to understand evolutionary and ecological processes. Annual Reviews of Ecology, Evolution, and Systematics. First published online as a Review in Advance on October 6, 2014. DOI: 10.1146/annurev-ecolsys-120213-091712. (PR)

Overballe-Petersen S and Willerslev E (2014). Horizontal transfer of short and degraded DNA has evolutionary implications for microbes and eukaryotic sexual reproduction. Bioessays 36, 1005-1010 (PR)(OA)

Pedersen JS, Valen E, Vargas Velazquez AM, Parker BJ, Rasmussen M, Lindgreen S, Lilje B, Tobin DJ, Kelly TK, Vang S, Andersson R, Jones PA, Hoover CA, Tikhonov A, Prokhortchouk E, Rubin EM, Sandelin A, Gilbert MT, Krogh A, Willerslev E, Orlando L.  Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome. Genome Res. 2014, 24:454-66. (PR)(OA)

Perry GH, Orlando L. 2015. Ancient DNA and human evolution. J Hum Evol, S0047-2484(14)00299-1. doi: 10.1016/j.jhevol.2014.12.002 (PR)

Raghavan M, DeGiorgio M, Albrechtsen A, Moltke I, Skoglund P, Korneliussen TS, Grønnow B, Appelt M, Gulløv HC, Friesen TM, Fitzhugh W, Malmström H, Rasmussen S, Olsen J, Melchior L, Fuller BT, Fahrni SM, Stafford Jr. T, Grimes V, Renouf MAP, Cybulski J, Lynnerup N, Lahr MM, Britton K, Knecht R, Arneborg J, Metspalu M, Cornejo OE, Malaspinas A-S, Wang Y, Rasmussen M, Raghavan V, Hansen TVO,  Khusnutdinova E, Pierre T, Dneprovsky K, Andreasen C, Lange H, Hayes MG, Coltrain J, Spitsyn VA, Götherström A, Orlando L, Kivisild T,  Villems R, Crawford MH, NielsenFC, Dissing J, Heinemeier J, Meldgaard M, Bustamante C, O’Rourke DH, Jakobsson M, Gilbert MTP, Nielsen R, Willerslev E. The genetic prehistory of the New World Arctic. Science 29 August 2014: Vol. 345 no. 6200. Abstract. Reprint. Full text. (PR)(OA)

Raghavan M, Skoglund P, Graf K, Metspalu M, Albrechtsen A, Moltke I, Rasmussen S, Stafford TW, Orlando O, Metspalu E, Karmin M, Tambets K, Rootsi S, Mägi R, Campos PF, Balanovska E, Balanovsky O, Khusnutdinova E, Litvinov S, Osipova LP, Fedorova SA, Voevoda MI, DeGiorgio M, Sicheritz-Ponten T, Brunak S, Demeshchenko S, Kivisild T, Villems  R,Nielsen R, Jakobsson M, and Willerslev E (2014). Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans. Nature 505, 87-91. (PR)

Raghavan M, Espregueira-Themudo G, Zazula GD, Smith CI, Campos PF. Musk Ox (Ovibos moschatus) of the Mammoth steppe: diet as a proxy for palaeoclimate and palaeoecological reconstruction. Quaternary Science Reviews 102(0):192-201 (2014) (PR)

Rasmussen M, Anzick SL, Waters MR, Skoglund P, DeGiorgio M, Stafford Jr TW, Rasmussen S, Moltke I, Albrechtsen A, Doyle SM, Poznik GD, Gudmundsdottir V, Yadav R, Malaspinas A-S, White SS, Allentoft ME, Cornejo OE, Tambets K, Eriksson A, Heintzman PD, Karmin M, Korneliussen TS, Meltzer DJ, Pierre TL, Stenderup J, Saag L, Warmuth VM, Lopes MC, Malhi RS, Brunak S, Sicheritz-Ponten T, Barnes I, Collins M, Orlando L, Balloux F, Manica A, Gupta R, Metspalu M, Bustamante CD, Jakobsson M,  Nielsen R & Willerslev E. The genome of a Late Pleistocene human from a Clovis burial site in western Montana. Nature  506, 225–229 (13 February 2014) doi:10.1038/nature13025 (PR)

Schubert M, Ermini L, Der Sarkissian C, Jónsson H, Ginolhac A, Schaefer R, Martin MD, Fernández R, Kircher M, McCue M, Willerslev E, and Orlando L. Characterization of ancient and modern genomes by SNP detection and phylogenomic and metagenomic analysis using PALEOMIX. Nature Protocols. 2014 May;9(5):1056-82. doi: 10.1038/nprot.2014.063. Epub 2014 Apr 10. PubMed PMID: 24722405. (PR, CO)

Schubert M, Jónsson H, Chang D, Der Sarkissian C, Ermini L, Ginolhac A, Albrechtsen A, Dupanloup I, Foucal A, Petersen B, Fumagalli M, Raghavan M, Seguin-Orlando A, Korneliussen TS, Velazquez AM, Stenderup J, Hoover CA, Rubin CJ, Alfarhan AH, Alquraishi SA, Al-Rasheid KA, MacHugh DE, Kalbfleisch T, MacLeod JN, Rubin EM, Sicheritz-Ponten T, Andersson L, Hofreiter M, Marques-Bonet T, Gilbert MT, Nielsen R, Excoffier L, Willerslev E, Shapiro B, Orlando L. 2014. Prehistoric genomes reveal the genetic foundation and cost of horse domestication. PNAS Dec 15. pii: 201416991. (PR, CO)

Seguin-Orlando A, Korneliussen TS, Sikora M, Malaspinas A-S, Manica A, Moltke I, Albrechtsen A, Ko A, Margaryan A, Moiseyev V, Goebel T, Westaway M, Lambert D, Khartanovich V, Wall JD, Nigst PR, Foley RA, Lahr MM, Nielsen R,  Orlando L, Willerslev E. Genomic structure in Europeans dating back at least 36,200 years. Science 28 November 2014: Vol. 346 no. 6213 pp. 1113-1118, DOI: 10.1126/science.aaa0114. Published Online November 6 2014 (PR)(OA)

Seixas AF, Juste X, Campos PF, Carneiro M, Ferrand N, Alves PC, Melo-ferreira J. Colonization history of Mallorca Island by the European rabbit, Oryctolagus cuniculus, and the Iberian hare, Lepus granatensis (Lagomorpha: Leporidae) Biological Journal of the Linnean Society 111(4): 748-760 (2014). (PR)

Shao C, Li Q, Chen S, Zhang P, Lian J, Hu Q, Sun B, Jin L, Liu S, Wang Z, Zhao H, Jin Z, Liang Z, Li Y, Zheng Q, Zhang Y, Wang J, Zhang G. Epigenetic modification and inheritance in sexual reversal of fish. Genome Research 2014, 24:604–615. (PR)(CO)(OA)

Skoglund P, Malmström H, Omrak A, Raghavan M, Valdiosera C, Günther T, Hall P, Tambets K, Parik J, Sjögren K-G, Apel J, Willerslev E, Stor J, Götherström A, Jakobsson M (2014). Genomic Diversity and Admixture differs for Stone-Age Scandinavian Foragers and Farmers. Science 344, 747-750. (PR)

Tsangaras K, Wales N, Sicheritz-Pontén T, Rasmussen S, Michaux J, Ishida Y, Morand S, Kampmann M-L, Gilbert MTP, Greenwood AD. 2014. Hybridization Capture Using Short PCR Products Enriches Small Genomes by Capturing Flanking Sequences (CapFlank). PLoS One 9:e109101. (PR)(OA)

Wales N, Andersen K, Cappellini E, Ávila-Arcos MC, Gilbert MTP. 2014. Optimization of DNA recovery and amplification from non-carbonized archaeobotanical remains. PLoS One 9:e86827. (PR)(OA)

Wang X, Li Q, Lian J, Li L, Jin L, Cai H, Xu F, Qi H, Zhang L, Wu F, Meng J, Que H, Fang X, Guo X, Zhang G. Genome-wide and single-base resolution DNA methylomes of the Pacific oyster Crassostrea gigas provide insight into the evolution of invertebrate CpG methylation. BMC Genomics 2014, 15:1119. http://www.biomedcentral.com/1471-2164/15/1119. (PR)(CO)(OA)

Warinner C, Rodrigues JFM, Vyas R, Trachsel C, Shved N, Grossmann J, Radini A, Hancock Y, Tito RY, Fiddyment S, Speller C, Hendy J, Charlton S, Luder HU, Salazar-García DC, Eppler E, Seiler R , Hansen LH, Castruita JAS , Barkow-Oesterreicher S, Teoh KY , Kelstrup CD, Olsen JV, Nanni P, Kawai T, Willerslev E, von Mering C, Lewis CM, Collins MJ, Gilbert MTP, Rühli F & Cappellini E, 2014, Pathogens and host immunity in the ancient human oral cavity. Nature genetics ., http://dx.doi.org/10.1038/ng.2906 (PR)(OA)

White NE, Bunce M, Mawson PR, Dawson R, Saunders DA, Allentoft ME (2014). Identifying conservation units after large-scale landclearing: a spatio-temporal molecular survey of endangered white-tailed black-cockatoos (Calyptorhynchus spp.). Diversity and Distributions, vol 20, 1208-1220. (PR)(OA)

Willerslev E, Davison J, Moora M, Zobel M, Coissac E, Edwards ME, Lorenzen ED, Vestergård M, Gussarova G, Haile J, Craine J, Gielly L, Boessenkool S, Epp LS, Pearman PB, Cheddadi R, Murray D, Bråthen KA, Yoccoz N, Binney H, Cruaud C, Wincker P, Goslar T, Alsos IG, Bellemain E et al. Fifty thousand years of Arctic vegetation and megafaunal diet. Nature  506, 47–51 (06 February 2014) doi:10.1038/nature12921. (PR)

Zhang G, Li C, Li Q, Li B, Larkin DM, Lee C, Storz JF, Antunes A, Greenwold MJ, Meredith RW, Ödeen A, Cui J, Zhou Q, Xu L, Pan H, Wang Z, Jin L, Zhang P, Hu H, Yang W, Hu J, Xiao J, Yang Z, Liu Y, Xie Q, Yu H, Lian J, Wen P, Zhang F, Li H, Zeng Y, Xiong Z, Liu S, Zhou L, Huang Z, An N, Wang J, Zheng Q, Xiong Y, Wang G, Wang B, Wang J, Fan Y, da Fonseca RR, Alfaro-Núñez A, Schubert M, Orlando L, Mourier T, Howard JT, Ganapathy G, Pfenning A, Whitney O, Rivas MV, Hara E, Smith J, Farré M, Narayan J, Slavov G, Romanov MN, Borges R, Machado JP, Khan I, Springer MS, Gatesy J, Hoffmann FG, Opazo JC, Håstad O, Sawyer RH, Kim H, Kim K-W, Kim HJ, Cho S, Li N, Huang Y, Bruford MW, Zhan X, Dixon A, Bertelsen MF, Derryberry E, Warren W, Wilson RK, Li S, Ray DA, Green RE, O’Brien SJ, Griffin D, Johnson WE, Haussler D, Ryder OA, Willerslev E, Graves GR, Alström P, Fjeldså J, Mindell DP, Edwards SV, Braun EL, Rahbek C, Burt DW, Houde P, Zhang Y, Yang H, Wang J, Jarvis ED, Gilbert MTP, Wang J (2014) & Avian Genome Consortium (2014). Comparative Genomics Reveals Insights into Avian Genome Evolution and Adaptation. Science 12, 1311-1320. (PR)(OA)