Publications 2013 – University of Copenhagen

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Publications 2013

Alexanderson H, Backman J, Cronin TM, Funder S, Ingólfsson O, Jakobsson M, Landvik JY, Löwemark L, Mangerud J, März C, Möller P, O'Regan M, Spielhagen RF. 2013. An Arctic perspective on dating Mid-Late Pleistocene environmental history. Quaternary Science Reviews. http://dx.doi.org/10.1016/j.quascirev.2013.09.023 (PR)(CO)

Allentoft ME. Recovering samples for ancient DNA research—guidelines for the field archaeologist. Antiquity Volume 087 Issue 338 December 2013. http://antiquity.ac.uk/projgall/allentoft338/

Alquezar-Planas DE, Mourier T, Bruhn CAW, Hansen AJ, Vitcetz SN, Mørk S, Gorodkin J, Nielsen HA, Guo Y, Sethuraman A, Paxinos EE, Shan T, Delwart EL, Nielsen LP. Discovery of a divergent HPIV4 from respiratory secretions using second and third generation metagenomic sequencing. Scientific Reports (Nature) 3, Article number: 2468 doi:10.1038/srep02468

Avila Arcos MDC , Ho SYW, Ishida Y, Nikolaidis N, Tsangaras K, Hönig K, Medina R , Rasmussen M , Fordyce SL , Calvignac-Spencer S , Willerslev E, Gilbert MTP , Helgen KM, Roca AL & Greenwood AD.  One hundred twenty years of koala retrovirus evolution determined from museum skins. Molecular Biology and Evolution , vol 30, no. 2, pp. 299-304. 2013, http://dx.doi.org/10.1093/molbev/mss223 (OA)

Ávila-Arcos MC, Ho SYW, Ishida Y, Nikolaidis N, Tsangaras K, Hönig K, Medina R, Rasmussen M, Fordyce SL, Calvignac-Spencer S, Willerslev E, Gilbert MTP, Helgen KM, Roca AL & Greenwood AD. Erratum: One hundred twenty years of Koala retrovirus evolution determined from museum skins. (Molecular Biology and Evolution (2013) 30:2 (299-304) DOI: 10.1093/molbev/mss223) ' Molecular Biology and Evolution , vol 30, no. 5, pp. 1237., http://dx.doi.org/10.1093/molbev/mst015

Bangsgaard P, (2013). Pangrave Faunal Practices - Ritual Deposits at five Cemeteries in Lower Nubia. ICAZ 2010 Conference: Animals in Funerary Space. Anthropozoologica 48 vol 2, 5-15 (PR) (OA)

Bellemain E, Davey ML, Kauserud H, Epp LS, Boessenkool S, Coissac E, Geml J, Edwards M, Willerslev E, Gussarova G, Taberlet P & Brochmann C. Fungal palaeodiversity revealed using high-throughput metabarcoding of ancient DNA from arctic permafrost. Environmental Microbiology , vol 15, no. 4, pp. 1176-1189., http://dx.doi.org/10.1111/1462-2920.12020

Bohmann K, Schnell IB, Gilbert MTP. When bugs monitor biodiversity. Molecular Ecology, 22(4), 909–911, 2013

Brotherton P, Haak W, Templeton J, Brandt G, Soubrier J, Adler C, Richards SM, Der Sarkissian C, Ganslmeier R, Friederich S, Dresely V, van Oven M, Kenyon R, Van der Hoek MB, Korlach J, Luong K, Ho SY, Quintana-Murci L, Behar DM, Meller H, Alt KW, Cooper A. Genographic Consortium, 2013. Neolithic mitochondrial haplogroup H genomes and the genetic origins of Europeans. Nature Communications 4:1764.Til toppen

Bønnelykke K, Sleiman P, Nielsen K, Kreiner-Møller E, Mercader JM, Belgrave D, den Dekker HT, Husby A, Sevelsted A, Faura-Tellez G, Mortensen LJ, Paternoster L, Flaaten R, Mølgaard A, Smart DE, Thomsen PF, Rasmussen MA, Bonàs-Guarch S, Holst C, Nohr EA, Yadav R, March ME, Blicher T, Lackie PM, Jaddoe VWV, Simpson A, Holloway JW, Duijts L, Custovic A, Davies DE, Torrents D, Gupta R, Hollegaard MV, Hougaard DM, Hakonarson H, Bisgaard H. A genome-wide association study identifies CDHR3 as a susceptibility locus for early childhood asthma with severe exacerbations. Nature Genetics (2013) doi:10.1038/ng.2830. Published online  17 November 2013

Campana GM, Robinson T, Campos PF, Tuross N. Independent confirmation of a diagnostic sheep/goat peptide sequence through DNA analysis and further exploration of its taxonomic utility within the Bovidae. J. Archaeol. Sci. 40 (2), February 2013: 1421-1424

Cao H, Wang Y, Zhang W, Chai X, Zhang X, Chen S, Yang F, Zhang C, Guo Y, Liu Y, Tang Z, Chen C, Xue Y, Zhen H, Xu Y, Rao B, Liu T, Zhao M, Zhang W, Li Y, Zhang X, ellier LC, Krogh A, Kristiansen K, Wang J and Li J. A short-read multiplex sequencing method for reliable, cost-effective and high-throughput genotyping in large-scale studies. Hum. Mutat., 34(12):1715–1720, Dec 2013. (PR)

Cappellini E, Gentry A, Palkopoulou E, Ishida Y, Cram D, Roos A-M, Watson M, Johansson US, Fernholm B, Agnelli P, Barbagli F, Littlewood DTJ, Kelstrup CD, Olsen JV, Lister AM, Roca AL, Dalén L, Gilbert MTP. Resolution of the type material of the Asian elephant, Elephas maximus Linnaeus, 1758 (Proboscidea, Elephantidae). Article first published online: 4 NOV 2013. DOI: 10.1111/zoj.12084

Cardoso JL, Vilstrup JT, Eisenmann V, Orlando L. First evidence of Equus asinus L. in the Chalcolithic disputes the Phoenicians as the first to introduce donkeys into the Iberian Peninsula. Journal of Archaeological Science (2013) 40:4483–4490. http://dx.doi.org/10.1016/j.jas.2013.07.010

Carpenter ML, Buenrostro JD, Valdiosera C, Schroeder H, Allentoft ME, Sikora M, Rasmussen M, Gravel S, Guillén S, Nekhrizov G, Leshtakov K, Dimitrova D, Theodossiev N, Pettener D, Luiselli D, Sandoval K, Moreno-Estrada A, Li Y, Wang J, Gilbert MTP, Willerslev E, Greenleaf WJ. Pulling out the 1 %: Whole-Genome Capture for the Targeted Enrichment of Ancient DNA Sequencing Libraries. The American Journal of Human Genetics, 25. October 2013. http://dx.doi.org/10.1016/j.ajhg.2013.10.002

Dal Zotto M, Di Domenico M, Garraffoni A. & Sørensen MV (2013). Franciscideres gen. nov. - a new, highly aberrant kinorhynch genus from Brazil, with an analysis of its phylogenetic position. Systematics and Biodiversity 11: 303-321. http://dx.doi.org/10.1080/14772000.2013.819045

Der Sarkissian C, Balanovsky O, Brandt G, Khartanovich V, Buzhilova A, Koshel S, Zaporozhchenko V, Gronenborn D, Moiseyev V, Kolpakov E, Shumkin V, Alt KW, Balanovska E, Cooper A, Haak W. Genographic Consortium, 2013. Ancient DNA reveals prehistoric gene-flow from Siberia in the complex human population history of North East Europe. PLoS Genetics 9(2):e1003296.

Fernández R, MacLeod CD, Pierce GJ, Covelo P, López A, Torres-Palenzuela J, Valavanis V and Santos MB, 2013. Inter-specific and seasonal comparison of the niches occupied by small cetaceans off North-West Iberia. Continental Shelf Research 64: 88–98.

Fietz K, Graves JA, Olsen MT (2013). Control Control Control: A Reassessment and Comparison of GenBank and Chromatogram mtDNA Sequence Variation in Baltic Grey Seals (Halichoerus grypus). PLoS ONE 8(8):e72853. doi:10.1371/journal.pone.0072853Til toppen

Foote AD, Kaschner K, Schultze S, Gariloa C, Ho SYW, Higham TFG, van der Es H, Embling C, Gregersen K, Johansson F, Willerslev E, Gilbert MTP. Ancient DNA reveals that bowhead whale lineages survived Late Pleistocene climate change and habitat shifts. Nature Communications 4, Article number:1677, doi:10.1038/ncomms2714

Fordyce SL, Kampmann M-L, van Doorn N, Gilbert MTP. Long-term RNA persistence in postmortem contexts. Investigative Genetics 2013, 4:7 doi:10.1186/2041-2223-4-7. http://www.investigativegenetics.com/content/4/1/7

Fordyce SL, Bragstad K, Pedersen SS, Jensen TG, Gahrn-Hansen B, Daniels R, Hay A, Kampmann M-L, Bruhn CAW, Moreno-Mayar JV, Ávila-Arcos MC, Gilbert MTP, Nielsen LP. Genetic diversity among pandemic 2009 influenza viruses isolated from a transmission chain. Virology Journal 2013, 10:116.

Fordyce SL, Avila-Arcos MC, Rasmussen M, Cappellini E, Romero-Navarro JA, Wales N, Alquezar-Planas DE, Penfield S, Brown TA, Vielle-Calzada J-P, Montiel R, Jørgensen T, Odegaard N, Jacobs M, Arriaza B, Higham TFG, Bronk Ramsey C, Willerslev E, Gilbert MTP. Deep sequencing of RNA from ancient maize kernels. PLoS ONE 8:e50961 (2013); http://dx.doi.org/10.1371/journal.pone.0050961

Gotfredsen AB. (2013). The role of birds as grave gifts in richly furnished Roman Iron Age inhumation graves c. 1-375 AD, eastern Denmark. Anthropozoologica 48 (2): 355-370. http://dx.doi.org/10.5252/az2013n2a12

Gonçalves VF , Stenderup J , Rodrigues-Carvalho C, Silva HP, Gonçalves-Dornelas H, Líryo A, Kivisild T, Malaspinas A-S, Campos PF, Willerslev E, Pena SDJ & Rasmussen M. Identification of Polynesian mtDNA haplogroups in remains of Botocudo Amerindians from Brazil. PNAS Early Edition , vol 110, no. 16, pp. 6465-6469., 2013. http://dx.doi.org/10.1073/pnas.1217905110

Guillot G &  Rousset F. Dismantling the Mantel tests. Methods in Ecology and Evolution. 4(4), 336-344, 2013

Iversen LL, Rannap R , Thomsen PF , Kielgast J, Sand-Jensen K. How do low dispersal species establish large range sizes? The case of the water beetle Graphoderus bilineatus. Ecography 36: 770-777. 2013

Jakobsson M, Andreassen K, Bjarnadóttir LR, Dove D, Dowdeswell JA, England JH, Funder S, Hogan K, Ingólfsson O, Jennings A, Krog-Larsen N, Kirchner N, Landvik JY, Mayer L, Mikkelsen N, Möller P, Niessen F, Nilsson J, O’Regan M, Polyak L, Nørgaard Petersen N, Stein R. 2013. Arctic Ocean glacial history. Quaternary Science Reviews. http://dx.doi.org/10.1016/j.quascirev.2013.07.033 (PR)(CO)

Jónsson H, Ginolhac A, Schubert M, Johnson P and Orlando, L. mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters. Bioinformatics, doi: 10.1093/bioinformatics/btt193. First published online: April 23, 2013. (PR)

Jørgensen A, Kristensen RM, Møller PR & Bangsgaard P, (2013). Marinbiologiske undersøgelser ved Al Zubarah, Qatar i 2012. In: Dyr, i Natur og Museum 2013. Copenhagen: The Natural History Museum of Denmark, 7-11

Khan SA , Kjær KH , Korsgaard NJ , Wahr J, Joughin IR, Timm LH, Bamber JL, van den Broeke MR, Stearns LA, Hamilton GS, Csatho BM, Nielsen K, Hurkmans R & Babonis G. Recurring dynamically-induced thinning during 1985-2010 on Upernavik Isstrøm, West Greenland. Journal of Geophysical Research: Earth Surface , vol 118, pp. 1-11, 2013

Kjeldsen KK , Khan SA, Wahr J , Korsgaard NJ , Kjær KH , Bjørk AA , Hurkmans R, van den Broeke MR, Bamber JL & van Angelen JH. Improved ice loss estimate of the northwestern Greenland Ice Sheet. Journal of Geophysical Research: Solid Earth , vol 118, pp. 1-11, 2013

Kjeldsen KK, Kjær KH, Bjørk AA, Khan SA, Korsgaard NJ, Funder SV, Larsen NK, Vinther B, Andresen CS, Long AJ, Woodroffe SA, Hansen ES, Odgaard BV, Olsen J, Bamber JL, van den Broeke M & Willerslev E. Mass loss from the southern half of the Greenland Ice Sheet since the Little Ice Age Maximum: - GRISO workshop, Beverly, MA, United States, 04/06/13 - 07/06/13

Korneliussen TS, Moltke I, Albrechtsen A, Nielsen R. Calculation of Tajima's D and other neutrality test statistics from low depth next-generation sequencing data. BMC Bioinformatics 2013 Oct. 2; 14(1):289 (OA) http://www.biomedcentral.com/1471-2105/14/289/abstract

Kunes P, Sørensen MK, Buylaert J-P, Murray AS, Houmark-Nielsen M, Odgaard BV. A new Middle Pleistocene interglacial record from Denmark: Chronostratigraphic correlation, palaeovegetation and fire dynamics. Boreas Volume 42, Issue 3, July 2013, Pages: 596–612, DOI 10.1111/bor.12002

Larsen NK, Funder S, Kjær KH, Kjeldsen KK, Knudsen MF, Linge H. Rapid early Holocene ice retreat in West Greenland. Quaternary Science Reviews, 6. July 2013. http://dx.doi.org/10.1016/j.quascirev.2013.05.027 (PR)(CO)

Martin MD, Cappellini E, Samaniego JA, Zepeda ML, Campos PF, Seguin-Orlando A, Wales N, Orlando L, Ho SYW, Dietrich FS, Mieczkowski PA, Heitman J, Willerslev E, Krogh A, Ristaino JB, Gilbert MTP. Reconstructing genome evolution in historic samples of the Irish potato famine pathogen. Nature Communications, 2013/07/18/online. http://www.nature.com/ncomms/2013/130718/ncomms3172/full/ncomms3172.html Supplementary information available for this article at www.nature.com/ncomms/2013/130718/ncomms3172/suppinfo/ncomms3172_S1.html

Mayer J, Tsangaras K, Heeger F, Ávila-Arcos M, Stengleine MD, Chen W, Sun W, Mazzonic CJ, Osterrieder N, Greenwood AD. A novel endogenous betaretrovirus group characterized from polar bears (Ursus maritimus) and giant pandas (Ailuropoda melanoleuca). Virology, Online 29. May 2013. http://dx.doi.org/10.1016/j.virol.2013.05.008Til toppen

Menzel P, Frellsen J, Plass M, Rasmussen SH and Krogh A. On the accuracy of short read mapping. Methods Mol. Biol., 1038:39–59, 2013. (PR)

Meredith CL, Buenrostro JD, Valdiosera VC, Schroeder H, Allentoft ME, Sikora, M, Rasmussen M, Gravel S, Guillen S, Nekhrizov N, Leshtakov K, Dimitrova D, Theodossiev N, Pettener D, Luiselli D, Sandoval K, Moreno-Estrada A, Li Y, Wang J, Gilbert MTP, Willerslev E, Greenleaf WJ, Bustamante CD. (2013). Pulling out the 1%: Whole-Genome Capture for the Targeted Enrichment of Ancient DNA Sequencing Libraries. Am. J. Hum. Gen. 93, 852-864.

Mikkelsen N, Elberling B, Ernstsen V, Friborg T, Funder S, Hansen BU, Kokfelt U, Korstgaard NJ, Bruun Kristensen J, Kuijpers A, Laier T, Nielsen T & Nørgaard-Pedersen N. 2013: Impact on permafrost, gashydrates and periglacial processes folIowing climate changes in Greenland. Final report for the Geocenter project PERMAGAS. Danmarks og Grønlands Geologiske Undersøgelse, Rapport 2013/95, 14 pp

Mortier F, Rossi V, Guillot G, Gourlet-Fleury S, Picard N. Population dynamics of species-rich ecosystems: the mixture of matrix population models approach. Methods in Ecology and Evolution, 4(4), 316-326, 2013

Moura AE, Nielsen SCA, Vilstrup JT, Moreno-Mayar V, Gilbert MTP, Gray H, Natoli A, Möller L, Hoelzel AR. Recent diversification of a marine genus tracks habitat preference and environmental change. Systematic Biology, Epub 8 Aug. 2013. doi: 10.1093/sysbio/syt051

Möller P, Östlund O, Barnekow L, Sandgren P, Palmbo F, Willerslev E. Living at the margin of the retreating Fennoscandian Ice Sheet: The early Mesolithic sites at Aareavaara, northernmost Sweden. The Holocene 23, 104-116, (2013), http://dx.doi.org/10.1177/0959683612455546

Neuhaus B, Pardos F, Sørensen MV. & Higgins RP (2013). Redescription, morphology, and biogeography of Centroderes spinosus (Reinhard, 1881) (Kinorhyncha, Cyclorhagida) from Europe. Cahiers de Biologie Marine 54: 109-131.

Neuhaus B. & Sørensen MV (2013). Populations of Campyloderes sp. (Kinorhyncha, Cyclorhagida): One global species with significant morphological variation? Zoologischer Anzeiger 252: 48-75. http://dx.doi.org/10.1016/j.jcz.2012.03.002

Neves RC, Bailly X, Leasi F, Reichert H, Sørensen MV. & Kristensen RM (2013). A complete three-dimensional reconstruction of the myoanatomy of Loricifera: comparative morphology of an adult and a Higgins larva stage. Frontiers in Zoology 10: 19.

Orlando L, Ginolhac A, Zhang G, Froese D, Albrechtsen A, Stiller M, Schubert M, Cappellini E, Petersen B, Moltke I, Johnson PLF, Fumagalli M, Vilstrup JT, Raghavan M, Korneliussen T, Malaspinas AS, Vogt J, Szklarczyk D, Kelstrup CD, Vinther J, Dolocan A, Stenderup J, Velazquez AMV, Cahill J, Rasmussen M, Wang X, Min J, Zazula GD, Seguin-Orlando A, Mortensen C, Magnussen K, Thompson JF, Weinstock J, Gregersen K, Røed KH, Eisenmann V, Rubin CJ, Miller DC, Antczak DF, Bertelsen MF, Brunak S, Al-Rasheid KAS, Ryder O, Andersson L, Mundy J, Krogh A, Gilbert MTP, Kjær KH, Sicheritz-Ponten T, Juhl Jensen L, Olsen JV, Hofreiter M, Nielsen R, Shapiro B, Jun W, Willerslev E: Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse. Nature(2013)   DOI:doi:10.1038/nature12323. (PR, CO)

Orlando L. 2013. Decoding genomes of the past. Biofutur 349:28-30

Ottoni C, Flink LG, Evin A, Geörg C, Cupere BD, Neer WV, Bartosiewicz L, Linderholm A, Barnett R, Peters J, Decorte R, Waelkens M, Vanderheyden N, Ricaut FX, Hoelzel AR, Mashkour M, Karimlu AFM, Seno SS, Daujat J, Brock F, Pinhasi R, Hongo H, Perez-Enciso M, Rasmussen M, Frantz L, Megens HJ, Crooijmans R, Groenen M, Arbuckle B, Benecke N, Vidarsdottir US, Burger J, Cucchi T, Dobney K, and Larson G. Pig domestication and human-mediated dispersal in western Eurasia revealed through ancient DNA and geometric morphometrics. Mol Biol Evol (2013) 30 (4): 824-832. doi:10.1093/molbev/mss261

Overballe-Petersen S, Harms K, Orlando L, Mayar JVM, Rasmussen S, Dahl TW, Rosing MT, Poole AM, Sicheritz-Ponten T, Brunak S, Inselmann S, de Vries J, Wackernagel W, Pybus OG, Nielsen R, Johnsen PJ, Nielsen KM, Willerslev E. Bacterial natural transformation by highly fragmented and damaged DNA. PNAS 2013 ; published ahead of print November 18, 2013, doi:10.1073/pnas.1315278110

Parducci L, Matetovici I, Fontana SL, Bennett KD, Suyama Y, Haile J, Kjær KH, Larsen NK, Drouzas AD, Willerslev E. Molecular and pollen-based vegetation analysis in lake sediments from central Scandinavia. Molecular Ecology. Volume 22, Issue 13, July 2013, Pages: 3511–3524. DOI: 10.1111/mec.12298

Pedersen JS, Valen E, AMV Velazquez, Parker BJ, Rasmussen M, Lindgreen S, Lilje B, Tobin DJ, Kelly TK, Vang S, Andersson R, Jones PA, Hoover CA, Tikhonov A, Prokhortchouk E, Rubin EM, Sandelin A, Gilbert MTP, Krogh A, Willerslev E, Orlando L. Genome-wide Nucleosome Map and Cytosine Methylation Levels of an Ancient Human Genome. Genome Res. published online December 3, 2013.Til toppen

Pedersen MW, Ginolhac A, Orlando L, Olsen J, Andersen K, Holm J, Funder S, Willerslev E, Kjær KH. A comparative study of ancient environmental DNA to pollen and macrofossils from lake sediments reveals taxonomic overlap and additional plant taxa. Quaternary Science Reviews, 2013 vol. 75 pp. 161-168.

Raghavan M, Skoglund P, Kelly E. Graf, Metspalu M, Albrechtsen A, Moltke I, Rasmussen S, Stafford Jr TW, Orlando L, Metspalu E, Karmin M, Tambets K, Rootsi S, Mägi R, Campos PF, Balanovska E, Balanovsky O, Khusnutdinova E, Litvinov S, Osipova LP, Fedorova SA, Voevoda MI, DeGiorgio M, Sicheritz-Ponten T, Brunak S, Demeshchenko S, Kivisild T,  Villems R, Nielsen R, Jakobsson M, Willerslev E. Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans. Nature, 20. November 2013; doi:10.1038/nature12736

Rasmussen SH, Jacobsen A and Krogh A. cWords – systematic microRNA regulatory motif discovery from mRNA expression data. Silence, 4(1):2, 2013. (PR)

Rehfeld A, Plass M, Krogh A and Friis-Hansen L. Alterations in polyadenylation and its implications for endocrine disease. Front. Endocrinol., 4:53, 2013. (PR)

Sánchez N, Rho HS, Min W, Kim D & Sørensen MV (2013). Four new species of Pycnophyes (Kinorhyncha: Homalorhagida) from Korea and the East China Sea. Scientia Marina 77: 353-380. http://dx.doi.org/10.3989/scimar.03769.15A

Schroeder H, Haviser JB, Price TD. The Zoutsteeg Three: Three new cases of African types of dental modification from Saint Martin, Dutch Caribbean. Int. J. Osteoarch. Article first published online: 29 JUN 2012. DOI: 10.1002/oa.2253

Schroeder H, Shuler KA, Chenery S. Childhood lead exposure in an enslaved African community in Barbados: Implications for Birthplace and Health Status. Am. J. Phys. Anth. 150(2): 203-209 (2013). DOI: 10.1002/ajpa.22193

Schwarcz HP, Stafford T, Knyf M, Chisholm B and Owsley D. Stable isotope evidence for diet and geographic origin of Kennewick Man. Chapter submission for Scientific Studies of the Kennewick Man Skeleton, Douglas Owsley and Richard Jantz, (Eds.) Texas A&M Press, College Station.

Seguin-Orlando A, Schubert M, Clary J, Stagegaard J, Alberdi MT, et al. Ligation Bias in Illumina Next-Generation DNA Libraries: Implications for Sequencing Ancient Genomes. PLoS ONE 8(10): e78575. doi:10.1371/journal.pone.0078575. (PR, CO)

Shapiro MD, Kronenberg Z, Cai L, Domyan ET, Pan H, Campbell M, Tan H, Huff CD, Hu H, Vickrey AI, Nielsen SCA, Stringham SA, Hu H, Willerslev E, Gilbert MTP, Yandell M, Zhang G, Wang J. Genomic diversity and evolution of the head crest in the rock pigeon. Science, 31. January 2013, DOI: 10.1126/science.1230422

Skotte L, Korneliussen TS, Albrechtsen A. Estimating Individual Admixture Proportions from Next Generation Sequencing Data. Genetics. 2013 Sept. 11

Stadthagen G, Tehler D, Høyland-Kroghsbo NM, Wen J, Krogh A, Jensen KT, Santoni-Rugiu E, Engelholm LH and Lund AH. Loss of miR-10a activates lpo and collaborates with activated Wnt signaling in inducing intestinal neoplasia in female mice. PLoS Genetics, 9(10):e1003913, Oct 2013. (PR)

Stafford Jr. TW. AMS Radiocarbon Dating of the Kennewick Skeleton, Washington. Chapter submission for Scientific Studies of the Kennewick Man Skeleton, Douglas Owsley and Richard Jantz, (Eds.) Texas A&M Press, College Station.

Sørensen MV (2013). Phylum Kinorhyncha. Zootaxa 3703: 63-66. http://dx.doi.org/10.11646/zootaxa.3703.1.13

Sørensen MV, Rho HS, Min W, Kim D & Chang CY (2013). Occurrence of the newly described kinorhynch genus Meristoderes (Cyclorhagida: Echinoderidae) in Korea, with the description of four new species. Helgoland Marine Research 67: 291-319. http://dx.doi.org/10.1007/s10152-012-0323-2

Thomsen VG, Rho HS, Kim D & Sørensen MV (2013). A new species of Dracoderes (Kinorhyncha: Dracoderidae) from Korea provides further support for a dracoderid-homalorhagid relationship. Zootaxa 3682: 133-142. http://dx.doi.org/10.11646/zootaxa.3682.1.6

Vilstrup JT, Seguin-Orlando A, Stiller M, Ginolhac A, Raghavan M, et al. (2013). Mitochondrial Phylogenomics of Modern and Ancient Equids. PLoS ONE 8(2): e55950. doi:10.1371/journal.pone.0055950

Wales N, Allaby R, Willerslev E. and Gilbert MTP. Ancient Plant DNA. In: Elias SA. (ed.) The Encyclopedia of Quaternary Science, vol. 2, pp. 705-715. Amsterdam: Elsevier. (2013)

Waters M and Stafford T. The First Americans: A Review of the Evidence for the Late-Pleistocene Peopling of the Americas. Paleoamerican Odyssey, pp 487-506

Wiley AE, Ostroma PH, Welch AJ, Fleischer RC, Gandhia H, Southon JR, Stafford Jr. TW, Penniman JF, Hu D, Duvall FP, James HF. Millennial-scale isotope records from a wide-ranging predator show evidence of recent human impact to oceanic food webs. PNAS May 28, 2013 vol. 110 no. 22. doi: 10.1073/pnas.1300213110

Winkelmann I, Campos PF, Strugnell J, Cherel Y, Smith PJ, Kubodera T, Allcock L, Kampmann M-L, Schroeder H, Guerra A, Norman M, Finn J, Ingrao D, Clarke M, Gilbert MTP. Mitochondrial genome diversity and population structure of the giant squid Architeuthis: genetics sheds new light on one of the most enigmatic marine species. Proc. R. Soc. B 22 May 2013 vol. 280 no. 1759 20130273. Published 20 March 2013 doi: 10.1098/rspb.2013.0273

Winther Pedersen M, Ginolhac A, Orlando L, Olsen J, Andersen K, Holm J, Funder S, Willerslev E, Kjær KH (2013). A comparative study of ancient environmental DNA to pollen and macrofossils from lake sediments reveals taxonomic overlap and additional plant taxa. Quaternary Science Rev 75, 161-168

Zhang H, Paijmans JL, Chang F, Wu X, Chen G, Lei C, Yang X, Wei Z, Bradley DG, Orlando L, O'Connor T, Hofreiter M. Morphological and genetic evidence for early Holocene cattle management in northeastern China. Nature Communications  4, Article number: 2755 doi:10.1038/ncomms3755. Published 08 November 2013. http://www.nature.com/ncomms/2013/131108/ncomms3755/full/ncomms3755.html