GeoGenetics > Publications
Publications
(Updated 06.05.2013)
Bohmann K, Schnell IB, Gilbert MTP. News and Views: When bugs monitor biodiversity. Mol. Ecol. (in press)
Fordyce SL, Kampmann M-L, van Doorn N, Gilbert MTP. Long-term RNA persistence in postmortem contexts. Investigative Genetics (in press)
Kunes P, Sørensen MK, Buylaert J-P, Murray AS, Houmark-Nielsen M, Odgaard BV. A new Middle Pleistocene interglacial record from Denmark: Chronostratigraphic correlation, palaeovegetation and fire dynamics. Boreas, (in press)
Ottoni C, Flink LG, Evin A, Geörg C, Cupere BD, Neer WV, Bartosiewicz L, Linderholm A, Barnett R, Peters J, Decorte R, Waelkens M, Vanderheyden N, Ricaut FX, Hoelzel AR, Mashkour M, Karimlu AFM, Seno SS, Daujat J, Brock F, Pinhasi R, Hongo H, Perez-Enciso M, Rasmussen M, Frantz L, Megens HJ, Crooijmans R, Groenen M, Arbuckle B, Benecke N, Vidarsdottir US, Burger J, Cucchi T, Dobney K, and Larson G. Pig domestication and human-mediated dispersal in western Eurasia revealed through ancient DNA and geometric morphometrics. Mol. Biol. Evol., (in press)
Parducci L, Matetovici I, Fontana SL, Bennett KD, Suyama Y, Haile J, Kjær KH, Larsen NK, Drouzas AD, Willerslev E. Molecular and pollen-based vegetation analysis in lake sediments from central Scandinavia. Mol. Ecol. (in press)
Schroeder H, Haviser JB, Price TD. The Zoutsteeg Three: Three new cases of African types of dental modification from Saint Martin, Dutch Caribbean. Int. J. Osteoarch. In press. DOI: 10.1002/oa.2253., (in press)
Wiley AE, Ostrom PH, Welch AJ, Fleischer RC, Gandhi H, Southon JR, Stafford TW, Penniman J, Hu D, Duvall F, James HF. Isotopic Evidence of Trophic Collapse in a Wide-Ranging Oceanic Seabird. Science, (in press)
Enghoff IB. History of herring and cod in Denmark – based on bones. In: Barrett, J. and C. Johnstone (eds.) Cod and Herring: The Chronology, Causes and Consequences of Medieval Sea Fishing. Oxford: Oxbow Books.
Campana GM, Robinson T, Campos PF, Tuross N. Independent confirmation of a diagnostic sheep/goat peptide sequence through DNA analysis and further exploration of its taxonomic utility within the Bovidae. J. Archaeol. Sci. 40 (2), February 2013: 1421-1424
Foote AD, Kaschner K, Schultze S, Gariloa C, Ho SYW, Higham TFG, van der Es H, Embling C, Gregersen K, Johansson F, Willerslev E, Gilbert MTP. Ancient DNA reveals that bowhead whale lineages survived Late Pleistocene climate change and habitat shifts. Nature Communications 4,Article number:1677doi:10.1038/ncomms2714
Fordyce SL, Bragstad K, Pedersen SS, Jensen TG, Gahrn-Hansen B, Daniels R, Hay A, Kampmann M-L, Bruhn CAW, Moreno-Mayar JV, Ávila-Arcos MC, Gilbert MTP, Nielsen LP. Genetic diversity among pandemic 2009 influenza viruses isolated from a transmission chain. Virology Journal 2013, 10:116.
Fordyce SL, Avila-Arcos MC, Rasmussen M, Cappellini E, Romero-Navarro JA, Wales N, Alquezar-Planas DE, Penfield S, Brown TA, Vielle-Calzada J-P, Montiel R, Jørgensen T, Odegaard N, Jacobs M, Arriaza B, Higham TFG, Bronk Ramsey C, Willerslev E, Gilbert MTP. Deep sequencing of RNA from ancient maize kernels. PLoS ONE 8:e50961 (2013)
Jónsson H., Ginolhac A., Schubert M., Johnson P. and Orlando, L. mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters. Bioinformatics (2013) doi: 10.1093/bioinformatics/btt193. First published online: April 23, 2013
Khan, SA , Kjær, KH , Korsgaard, NJ , Wahr, J, Joughin, IR, Timm, LH, Bamber, JL, van den Broeke, MR, Stearns, LA, Hamilton, GS, Csatho, BM, Nielsen, K, Hurkmans, R & Babonis, G. Recurring dynamically-induced thinning during 1985-2010 on Upernavik Isstrøm, West Greenland. Journal of Geophysical Research: Earth Surface , vol 118, pp. 1-11, 2013
Kjeldsen, KK , Khan, SA, Wahr, J , Korsgaard, NJ , Kjær, KH , Bjørk, AA , Hurkmans, R, van den Broeke, MR, Bamber, JL & van Angelen, JH. Improved ice loss estimate of the northwestern Greenland Ice Sheet. Journal of Geophysical Research: Solid Earth , vol 118, pp. 1-11, 2013
Möller P, Östlund O, Barnekow L, Sandgren P, Palmbo F, Willerslev E. Living at the margin of the retreating Fennoscandian Ice Sheet: The early Mesolithic sites at Aareavaara, northernmost Sweden. The Holocene 23, 104-116, (2013)
Schroeder H, Shuler KA, Chenery S. Childhood lead exposure in an enslaved African community in Barbados: Implications for Birthplace and Health Status. Am. J. Phys. Anth. 150(2): 203-209 (2013). DOI: 10.1002/ajpa.22193
Shapiro MD, Kronenberg Z, Cai L, Domyan ET, Pan H, Campbell M, Tan H, Huff CD, Hu H, Vickrey AI, Nielsen SCA, Stringham SA, Hu H, Willerslev E, Gilbert MTP, Yandell M, Zhang G, Wang J. Genomic diversity and evolution of the head crest in the rock pigeon. Science, 31. January 2013, DOI: 10.1126/science.1230422
Vilstrup JT, Seguin-Orlando A, Stiller M, Ginolhac A, Raghavan M, et al. (2013). Mitochondrial Phylogenomics of Modern and Ancient Equids. PLoS ONE 8(2): e55950. doi:10.1371/journal.pone.0055950
Wales N., Allaby R., Willerslev E. and Gilbert M.T.P. Ancient Plant DNA. In: Elias S.A. (ed.) The Encyclopedia of Quaternary Science, vol. 2, pp. 705-715. Amsterdam: Elsevier. (2013)
Winkelmann I, Campos PF, Strugnell J, Cherel Y, Smith PJ, Kubodera T, Allcock L, Kampmann M-L, Schroeder H, Guerra A, Norman M, Finn J, Ingrao D, Clarke M, Gilbert MTP. Mitochondrial genome diversity and population structure of the giant squid Architeuthis: genetics sheds new light on one of the most enigmatic marine species. Proc. R. Soc. B 22 May 2013 vol. 280 no. 1759 20130273. Published 20 March 2013 doi: 10.1098/rspb.2013.0273
Abel Nielsen SC, Mourier T, Baandrup U, Mangart Søland T, Bertelsen MF, Gilbert MTP, Nielsen LP. Probable Transmission of Coxsackie B3 Virus from Human to Chimpanzee, Denmark. Emerging Infectious Diseases, Volume 18, Number 7 - July 2012
Allentoft ME, Collins M, Harker D, Haile J, Oskam CL, Hale ML, Campos PF, Samaniego JA, Gilbert MTP, Willerslev E, Zhang G, Scofield RP, Holdaway RN, Bunce M. The half-life of DNA in bone: measuring decay kinetics in 158 dated fossils. Proc. Royal Soc. B 2012 279, 4724-4733, (2012). doi: 10.1098/rspb.2012.1745
Andersen K, Bird KL, Rasmussen M, Haile J, Breuning-Madsen H, Kjær KH, Orlando L, Gilbert MTP, Willerslev E. Meta-barcoding of ‘dirt' DNA from soil reflects vertebrate biodiversity. Mol. Ecol. 21:1966-1979, (2012)
Andresen CS, Straneo F, Ribergaard MH, Bjørk AA, Andersen TJ, Kuijpers A, Nørgaard-Petersen N, Kjær KH, Schjøt F, Weckström K, Ahlstrøm AP. Rapid response of Helheim Glacier in Greenland to climate variability over the past century. Nature Geoscience, vol. 5, pp. 37-41, (2012)
Avila-Arcos MC, Ho SYW, Ishida Y, Nikolaidis N, Tsangaras K, Honig K, Medina R, Rasmussen M, Fordyce SL, Calvignac-Spencer S, Willerslev E, Gilbert MTP, Helgen KM, Roca AL, Greenwood AD. 120 years of koala retrovirus evolution determined from museum skins. Molecular Biology and Evolution, 2012, doi: 10.1093/molbev/mss223
Beck S, Kuningas S, Esteban-Pavo R, Foote AD. The influence of ecology on sociality in the killer whale (Orcinus orca). Behavioral Ecology, 23: 246-253, (2012)
Bengtsson CF, Olsen ME, Brandt LØ, Bertelsen MF, Willerslev E, Tobin DJ, Wilson AS, Gilbert MTP. DNA from keratinous tissue, part I: Hair and nail. Ann Anat 194: 17-25, (2012)
Biagini P, Thèves C, Balaresque P, Géraut A, Cannet C, Keyser C, Nikolaeva D, Gérard P, Duchesne S, Orlando L, Willerslev E, Alekseev AN, de Micco P, Ludes B, Crubézy E. Variola virus in a 300-year-old Siberian mummy. N. Engl. J. Med. 2012 Nov 22;367(21):2057-9. doi: 10.1056/NEJMc1208124
Bjørk AA. Arkivfotos udvider klimaforskernes horisont. Tidsskriftet Grønland, 03/2012, pp. 174-180
Bjørk AA, Kjær KH, Korsgaard NJ, Khan SA, Kjeldsen KK, Andresen CS, Box JE, Larsen NK, Funder S. An aerial view of 80 years of climate-related glacier fluctuations in Southeast Greenland. Nature Geoscience, June 2012 Vol 5 No 6
Boessenkool S, Epp LS, Haile J. Bellemain E, Edwards M, Coissac E, Willerslev E, Brochmann C. Blocking human contaminant DNA during PCR allows amplification of rare mammal species in sedimentary ancient DNA. Mol. Ecol. 21, 1806–1815, (2012)
Bray SCE, Austin JJ, Metcalf JL, Østbye K, Østbye E, Lauritzen S-E, Aaris-Sørensen K, Valdiosera C, Adler CJ, Cooper A. Ancient DNA identifies post-glacial recolonisation, not recent bottlenecks, as the primary driver of contemporary mtDNA phylogeography and diversity in Scandinavian brown bears. Diversity and Distributions 2012:1-12
Brüniche-Olsen A, Gravlund P, Lorenzen ED. Impact of genetic drift and restricted gene flow in indigenous cattle breeds: evidence from the Jutland breed. Animal Genetic Resources/Ressources génétiques animales/Recursos genéticos animales, 50, pp.75–85, June 2012
Campos PF, Craig OE, Turner-Walker G, Peacock E, Willerslev E, Gilbert MTP. DNA in ancient bone – where is it located and how should we extract it? Ann. Anat. 194: 7-16, (2012)
Campos PF, Gilbert MTP. DNA extraction from formalin-fixed material. In: Shapiro B, Hofreiter M (eds.). Methods in Molecular Biology: Ancient DNA. Springer (2012)
Campos PF, Gilbert MTP. DNA extraction from keratin and chitin. In: Shapiro B, Hofreiter M (eds.) Methods in Molecular Biology: Ancient DNA. Springer (2012)
Cappellini E, Jensen L, Szklarczyk D, Ginolhac A, da Fonseca R, Stafford T, Holven S, Collins M, Orlando L, Willerslev E, Gilbert MTP, Olsen JV. Proteomic analysis of a Pleistocene mammoth femur reveals more than one hundred ancient bone proteins. J. Proteome Res. 11: 917-926, (2012)
Crone SG, Jacobsen A, Federspiel B, Bardram L, Krogh A, Lund AH, Friis- Hansen L. microRNA-146a inhibits G protein-coupled receptor-mediated activation of NF-kappaB by targeting CARD10 and COPS8 in gastric cancer. Mol. cancer, 11(1):71, Sep 2012
Dalén L, Orlando L, Shapiro B, Brandström Durling M, Quam R, Gilbert MTP, Fernández-Lomana JCD, Willerslev E, Arsuaga JL, Götherström A. Partial genetic turnover in neandertals: continuity in the east and population replacement in the west. Mol. Biol. Evol. 29:1893-1897, (2012)
Duchene S, Frey A, Alfaro-Núñez A, Dutton PH, Gilbert MTP, Morin PA. Marine turtle mitogenome phylogenetics and evolution. Mol. Phyl. Evol. Volume 65, Issue 1, October 2012, Pages 241-250
Epp LS, Boessenkool S, Bellemain EP, Haile J, Esposito A, Riaz T, Erséus C, Gusarov VI, Edwards ME, Johnsen A, Stenøien HK, Hassel K, Kauserud H, Yoccoz NG, Bråthen KA, Willerslev E, Taberlet P, Coissac E, Brochmann C. New environmental metabarcodes for analysing soil DNA: potential for studying past and present ecosystems. Mol. Ecol. Volume 21, Issue 8, April 2012, Pages: 1821–1833, Article first published online : 10 Apr 2012, DOI: 10.1111/j.1365-294X.2012.05537.x
Foote AD. Investigating ecological speciation in non-model organisms: a case study on killer whale ecotypes. Evolutionary Ecology Research 14, 447-465, 2012
Foote AD, Hofreiter M, Morin PA. Ancient DNA and marine mammals: Studying long lived species over ecological and evolutionary timescales. Ann. Anat. 194: 112-120, (2012)
Foote AD, Thomsen PF, Sveegaard S, Wahlberg M, Kielgast J, Kyhn LA, Salling AB, Galatius A, Orlando L, Gilbert MTP. Investigating the Potential Use of Environmental DNA (eDNA) for Genetic Monitoring of Marine Mammals. PLoS ONE, 2012 vol:7 hft.:8 s.:e41781
Foote AD, Vester H, Vikingsson GA, Newton J. Dietary variation within and between populations of northeast Atlantic killer whales Orcinus orca inferred from d13C and d15N analyses. Marine Mammal Science, Volume 28, Issue 4, pages E472–E485, October 2012
Ginolhac A, Vilstrup J, Stenderup J, Rasmussen M, Stiller M, Shapiro B, Zazula G, Froese D, Steinmann KE, Thompson JF, Al-Rasheid KA, Gilbert TM, Willerslev E, Orlando L. Improving the performance of True Single Molecule Sequencing for ancient DNA. BMC Genomics. 2012 May 10;13(1):177
Gotfredsen AB. Book review: Prummel, W., Zeiler, J.T., & Brinkhuizen, D.C. (eds.) 2010. Birds in Archaeology. Proceedings of the 6th Meeting of the ICAZ Bird Working Group in Groningen (23.8 - 27.8 2008). Groningen Archaeological Studies. Volume 12. Barkhuis. Groningen, 284 p., ISBN 978-90-77922-77-4, price: 50 EURO. Praehistorische Zeitschrift 87 (1): 216-221. De Gruyter. Berlin. DOI 10.1515/pz-2012-2013. (2012)
Gotfredsen AB, Møbjerg T. Urokser og bævere fra Midtjylland - nye dateringer af gamle fund. Museum Midtjylland, Midtjyske Fortællinger. 2012: 59-70. (2012)
Gravlund, P, Aaris-Sørensen K, Hofreiter M, Meyer M, Bolbach J, Noe-Nygård N. Ancient DNA extracted from Danish aurochs (Bos primigenius): Genetic diversity and preservation. Ann. Anat. 194 (1):103-111, (2012)
Gregersen LH, Jacobsen A, Frankel LB, Wen J, Krogh A, Lund AH. MicroRNA-143 down-regulates Hexokinase 2 in colon cancer cells. BMC Cancer 12:232, 2012
Hansen KL. E Museo Lundii - Addendum. 26 jun 2012 1. edition udg. Danmark: Statens Naturhistoriske Museum. 104 s. ISBN: 978-87-87519-75-5. 2012
Houmark-Nielsen M, Linge H, Fabel D, Schnabel C, Xu S, Wilcken KM, Binnie S. Cosmogenic surface exposure dating the last deglaciation in Denmark: discrepancies with independent age constraints suggest delayed periglacial landform stabilization. Quaternary Geochronology 13, 1-17, 2012. doi: 10.1016/j.quageo.2012.08.006
Jacobsen MW, Hansen MM, Orlando L, Bekkevold D, Willerslev E, Bernatchez L, Gilbert MTP. Mitogenome sequencing reveals shallow evolutionary histories and recent divergence time between morphologically and ecologically distinct European whitefish (Coregonus spp.). Mol. Ecol. 21:2727-2742, (2012)
Jenkins DL, Davis LG, Stafford Jr TW, Campos PF, Hockett B, Jones GT, Cummings LS, Yost C, Connolly TJ, Yohe II RM, Gibbons SC, Raghavan M, Rasmussen M, Paijmans JLA, Hofreiter M, Kemp BM, Barta JL, Monroe C, Gilbert MTP, Willerslev E. Clovis Age Western Stemmed Projectile Points and Human Coprolites at the Paisley Caves. Science 13 July 2012: Vol. 337 no. 6091 pp. 223-228 DOI:10.1126/science.1218443
Jones EP, Skirnisson K, McGovern TH, Gilbert MTP, Willerslev E, Searle JB. Fellow travellers: a concordance of colonization patterns between mice and men in the North Atlantic region. BMC Evol. Biol. 12, 35. (2012)
Jørgensen T, Haile J, Möller P, Andreev A, Boessenkool S, Rasmussen M, Kielast F, Coissac E, Taberlet P, Brochmann C, Bigelow N, Andersen K, Orlando L, Gilbert MTP, Willerslev E. A comparative study of ancient sedimentary DNA, pollen and macrofossils from permafrost sediments of Northern Siberia reveals long-term vegetational stability. Mol. Ecol. 21:1989-2003, (2012)
Jørgensen T, Kjær K, Haile J, Rasmussen M, Boessenkool S, Andersen K, Coissac E, Taberlet P, Brochmann C, Orlando L, Gilbert MTP, Willerslev E. Islands in the Ice: detecting past vegetation on Greenlandic Nunataks using historical records and sedimentary ancient DNA meta-barcoding. Mol. Ecol. 21:1980-1988, (2012)
Kjær KH, Khan SA, Korsgaard NJ, Wahr J, Bamber JL, Hurkmans R, van den Broeke M, Timm LH, Kjeldsen KK, Bjørk AA, Larsen NK, Jørgensen LT, Færch-Jensen A, Willerslev A. Aerial Photographs Reveal Late–20th-Century Dynamic Ice Loss in Northwestern Greenland. Science 3 August 2012: Vol. 337 no. 6094 pp. 569-573 DOI: 10.1126/science.1220614
Lavstsen T, Turner L, Saguti F, Magistrado P, Rask TS, Jespersen JS, Wang CW, Berger SS, Baraka V, Marquard AM, Seguin-Orlando A, Willerslev E, Gilbert MTP, Lusingu J, Theander TG. Plasmodium falciparum erythrocyte membrane protein 1 domain cassettes 8 and 13 are associated with severe malaria in children. Proc. Natl. Acad. Sci. USA 109:10160-10161
Lorenzen ED, Heller R, Siegismund HR. Comparative phylogeography of African savannah ungulates. Mol. Ecol. 15. June 2012, DOI: 10.1111/j.1365-294X.2012.05650.x
Malaspinas AS, Malaspinas O, Evans SN, Slatkin M. Estimating allele age and selection coefficient from time-serial data. GENETICS October 1. 2012 vol. 192 no. 2, 599-607
Malmström H, Vretemark M, Tillmar A, Brandström Durling M, Skoglund P, Gilbert MTP, Willerslev E, Holmlund G, Götherström A. Finding the founder of Stockholm – a kinship study based on Y-chromosomal, autosomal and mitochondrial DNA. Ann. Anat. 194:138-145. (2012)
MacFadden BJ, Barbara A, Purdy, Church K, Stafford Jr TW. Humans were contemporaneous with late Pleistocene mammals in Florida: evidence from rare earth elemental analysis. Journal of Vertebrate Paleontology: 32, 708-716. (2012)
Mourier T, Ho SYW, Gilbert MTP, Willerslev E, Orlando L. Statistical guidelines for detecting past population shifts using ancient DNA. Molecular Biology Evolution 29:2241-2251, (2012)
Murray DC, Pearson SG, Fullagar R, Chase BM, Houston J, Atchison J, White NE, Bellgard MI, Clarke E, Macphail M, Gilbert MTP, Haile J, Bunce M. High-throughput sequencing of ancient plant and mammal DNA preserved in herbivore middens. Quat. Sci. Rev. 58:135-145, (2012)
Nielsen K, Khan SA, Korsgaard NJ, Kjær KH, Wahr J, Bevis M, Stearns LA, Timm LH. Crustal uplift due to ice mass variability on Upernavik Isstrøm, West Greenland. Earth and Planetary Science Letters , vol 353-354, pp. 182-189, (2012)
Noer CL, Dabelsteen T, Bohmann K, Monadjem A. Molossid bats in an African agro-ecosystem select sugarcane fields as foraging habitat. African Zoology 47(1): 1–11(April 2012)
Odumosu, T. Default Positions: African Icons and stereotypes from Georgian print culture. The Ephemerist 158 (Autumn), 10-13
Odumosu T. Abolitionists, African Diplomats and ‘the Black Joke’ in George Cruikshank’s 'New Union Club'. In McGrath, Elizabeth and Jean Michel Massing, eds. The Slave in European Art: From Renaissance Trophy to Abolitionist Emblem. Warburg Institute Colloquia. Vol. 20. (2012). London; Turin: Warburg Institute; Nino Aragno, 333-359. ISBN 978-1-908590-43-5.
Oonk S, Cappellini E, Collins MC. Soil proteomics: An assessment of its potential for archaeological site interpretation. Organic Geochemistry, Organic Geochemistry, Vol. 50, September 2012, Pp. 57-67
Oskam CL, Allentoft ME, Walter R, Scofield RP, Haile J, Holdaway RN, Bunce M, Jacomb C. Ancient DNA analyses of early archaeological sites in New Zealand reveal extreme exploitation of moa (Aves: Dinornithiformes) at all life stages. Quat. Sci. Rev. 52 (2012) 41e48
Overballe-Petersen S, Orlando L, Willerslev E. Next-generation sequencing offers new insights into DNA degradation. Trends in Biotechnology. 1 July 2012, Vol. 30, Issue 7, pp. 364-368
Paijmans JLA, Gilbert MTP, Hofreiter M. Mitogenomic analyses from ancient DNA. Mol. Phyl. Evol. 22:1494-1499, (2012)
Parducci L, Jørgensen T, Tollefsrud MM, Elverland E, Alm T, Fontana SL, Bennett KD, Haile J, Matetovici I, Suyama Y, Edwards ME, Andersen K, Rasmussen M, Boessenkool S, Coissac E, Brochmann C, Taberlet P, Houmark-Nielsen M, Larsen NK, Orlando L, Gilbert MTP, Kjær KH, Alsos I.G, Willerslev E. Glacial Survival of Boreal Trees in Northern Scandinavia. Science. 2 March 2012: 1083-1086. Supporting online material: 1-16. [DOI:10.1126/science.1216043
Parducci L, Edwards ME, Bennett KD, Alm T, Elverland E, Tollefsrud MM, Jørgensen T, Houmark-Nielsen M, Larsen NK, Kjær KH, Fontana SL, Alsos IG, Willerslev E. Response to Comment on ‘Glacial survival of boreal trees in northern Scandinavia’. Science. 338, 742-743, (2012)
Perren BP, Wolfe AP, Cooke CA, Kjær KH, Mazzucchi D, Steig EJ. Twentieth-century warming revives the world's northernmost lake. Geology. Published online on 18 September 2012 as doi:10.1130/G33621.1
Philip S, Castro LF, da Fonseca RR, Reis-Henriques MA, Vasconcelos V, Santos MM, Antunes A. Adaptive evolution of the Retinoid X receptor in vertebrates. Genomics. 2012 Feb; 99(2):81-9
Reid AJ, Vermont SJ, Cotton JA, Harris D, Hill-Cawthorne GA, Könen-Waisman S, Latham S, Mourier T, Norton R, Quail M, Sanders M, Shanmugam D, Sohal A, Wasmuth J, Brunk B, Grigg M, Howard JC, Parkinson J, Roos D, Trees AJ, Berriman M, Pain A, Wastling JM. Comparative genomics of the apicomplexan parasites Toxoplasma gondii and Neospora caninum: Coccidia differing in host range and transmission strategy. PLoS Pathogens. 22. March 2012
Sánchez-Quinto F, Schroeder H, Ramirez O, Ávila-Arcos MC, Pybus M, Olalde I, Velazquez AMV, Marcos MEP, Encinas JMV, Bertranpetit J, Orlando L, Gilbert MTP, Lalueza-Fox C. Genomic Affinities of Two 7,000-Year-Old Iberian Hunter-Gatherers. Curr. Biol. 21 August 2012 Vol. 22 Issue 16
Sánchez-Quinto F, Botiguá LR, Civit S, Arenas C, Ávila-Arcos MC et al. North African Populations Carry the Signature of Admixture with Neandertals. PLoS ONE 7(10): e47765. (2012). doi:10.1371/journal.pone.0047765
Schnell IB, Thomsen PF, Wilkinson N, Rasmussen M, Jensen LRD, Willerslev E, Bertelsen MF, Gilbert MTP. Terrestrial mammal biodiversity screening using DNA from Haematophagous leeches. Curr. Biol. 22: R262-263, (2012)
Schomacker A, Benediktsson ÍÖ, Ingólfsson Ó, Friis B, Korsgaard NJ, Kjær KH, Keiding JK. Late Holocene and modern glacier changes in the marginal zone of Sólheimajökull, South Iceland. Jokull, vol 62, pp. 111-130 (2012)
Schubert M, Ginolhac A, Lindgreen S, Thompson JF, Al-Rasheid KA, Willerslev E, Krogh A, Orlando L. Improving ancient DNA read mapping against modern reference genomes. BMC Genomics. 2012 May 10;13(1):178
Sinding MHS. 4.500 års grønlandshvaler vejer under et gram. Tidsskriftet Grønland, 03/2012, pp. 191-197
Sinding MHS, Gilbert MTP, Grønnow B, Gulløv HC, Toft PA, Foote AD. Minimally destructive DNA extraction from archaeological artefacts made from whale baleen. Journal of Archaeological Science, Vol. 39, Issue 12, December 2012, Pages 3750-3753.
Skoglund P, Malmström H, Raghavan M, Storå J, Hall P, Willerslev E, Gilbert MTP, Götherström A, Jakobsson M. Origins and genetic legacy of Neolithic farmers and hunter-gatherers in Europe. Science 336:466-469, (2012)
Taberlet P, Coissac E, Brochmann C… E. Willerslev. New environmental metabarcodes for analysing soil DNA: potential for studying past and present ecosystems. Mol. Ecol. 21(8): 1821-33, (2012)
Taberlet P, Coissac E, Pompanon F, Brochmann C, Willerslev E. Towards next-generation biodiversity assessment using DNA metabarcoding. Mol. Ecol. Volume 21, Issue 8, Pages: 2045–2050, Article first published online : 10 APR 2012, DOI: 10.1111/j.1365-294X.2012.05470.x
Thomsen PF, Kielgast J, Iversen LL, Møller PR, Rasmussen M, Willerslev E. Detection of a Diverse Marine Fish Fauna Using Environmental DNA from Seawater Samples. PLoS One, 29. August 2012
Thomsen PF, Kielgast J, Iversen LL, Wiuf C, Rasmussen M, Gilbert MTP, Orlando L, Willerslev E. Monitoring endangered freshwater biodiversity using environmental DNA. Mol. Ecol. 21:2565-2573, (2012)
Tsangaras K, Avila-Arcos MC, Ishida Y, Helgen KM, Roca AL, Greenwood AD. Historically low mitochondrial DNA diversity in koalas (Phascolarctos cinereus). BMC Genetics, Oct. 24; 13:92
Wales N, Romero-Navarro JA, Cappellini E, Gilbert MTP. Choosing the best plant for the job: a cost-effective assay to prescreen plant remains destined for shotgun sequencing. PLoS ONE 20 September 2012
Wang SY, Cappellini E, Zhang HY. Why collagens best survived in fossils? Clues from amino acid thermal stability. Biochemical & Biophysical Research Communications, 422, 5-7, (2012)
Yang MA, Malaspinas AS, Durand EY, Slatkin M. Ancient structure in Africa unlikely to explain neanderthal and non-african genetic similarity. Mol. Biol. Evol. 2012 Oct;29(10):2987-95. Epub 2012 Apr 18
Yoccoz NG, Bråthen NG, Gielly L, Haile J, Edwards ME, Goslar T, von Stedingk H, Brysting AK, Coissac E, Pompanon F, Sønstebø JH, Miquel C, Valentini A, de Bello F, Chave J, Thuiller W, Wincker P, Cruaud C, Gavory F, Rasmussen M, Gilbert MTP, Orlando L, Brochmann C, Willerslev E, Taberlet P. DNA from soil mirrors plant functional and structural diversity. Mol. Ecol. 21:3647-3655, (2012)
Weischenfeldt J, Waage J, Tian G, Zhao J, Damgaard I, Jakobsen JS, Kristiansen K, Krogh A, Wang J, Porse BT. Mammalian tissues defective in nonsense-mediated mRNA decay display highly aberrant splicing patterns. Genome Biology, 13(5):R35, 2012
Publications 2011
Allentoft ME, Oskam C, Houston J, Hale ML, Gilbert MTP, Rasmussen M, Spencer P, Jacomb C, Willerslev E, Holdaway RN, Bunce M. Profiling the dead: Generating microsatellite data from fossil bones of extinct megafauna - protocols, problems and prospects. PLoS ONE 6:e16670, (2011)
Arnold L, Roberts RG, MacPhee RDE, Haile JS, Brock F, Möller P, Froese DG, Tikhonov AN, Chivas AR, Gilbert MTP, Willerslev E. Dirt, dates and DNA: OSL and radiocarbon chronologies of perennially-frozen sediments in Siberia, and their implications for sedimentary ancient DNA studies. Boreas 40:417-445, (2011)
Arppe L, Aaris-Sørensen K, Daugnora L, Lõugas L, Wojtal P, Zupins I. The palaeoenvironmental delta13C record in European woolly mammoth. Quaternary International 245:285-290, (2011)
Ávila-Arcos MC, Cappellini E, Romero-Navarro JA, Wales N, Moreno-Mayar JV, Rasmussen M, Fordyce SL, Montiel R, Vielle-Calzada J-P, Willerslev E, Gilbert MTP. Application and comparison of large-scale solution-based DNA capture-enrichment methods on ancient DNA. Scientific Reports 1:74, (2011)
Baret F, Bringer F, Busti D, Carpentier A, Caudron N, Charrier C, Celle F, Daoust G, Froissart H, Geray L, Jalabert S, Mauffrey A, Olive C, Picoche J-M, Rebulard S, Salomon L, Seguin-Orlando A, Seyed R, Thébault P-O, Vigier S, Woerle A. SVT 1re S. (Editor: Belin ). A French textbook for before-last year of high-school (scientific sections) on natural and earth sciences, 335 pages, April 2011
Barrett JH, Orton D, Johnstone C, Harland J, Van Neer W, Ervynck A, Roberts C, Locker A, Amundsen C, Enghoff IB, Hamilton-Dyer S, Heinrich D, Hufthammer A, Jones A, Jonsson L, Makowiecki D, Pope P, O'Connell T, de Roo T, Richards M. Interpreting the expansion of sea fishing in Medieval Europe using stable isotope analysis of archaeological cod bones . Journal of Archaeological Science 36: 1516-1524. (2011)
Bjørk AA, Björck S, Cronholm A, Haile J, Ljung K, Porter C. Possible Late Pleistocene volcanic activity on Nightingale Island, South Atlantic Ocean, based on geoelectrical resistivity measurements, sediment corings and 14C dating. GFF, vol. 133, Issue 3-4, pp. 141-147, (2011)
Bohmann K, Monadjem A, Noer C, Rasmussen M, Zeale M, Clare E, Jones G, Willerslev E, Gilbert MTP. Molecular diet analysis of two African free-tailed bats (Molossidae) using high throughput sequencing. PLoS ONE 6:e21441, (2011)
Bou Kheir T, Futoma-Kazmierczak A, Jacobsen A, Krogh A, Bardram L, Hother C, Grønbæk K, Federspiel B, Lund AH, Friis-Hansen L. miR-449 inhibits cell proliferation and is down-regulated in gastric cancer. Mol. cancer, 10:29, 2011
Brandt LØ, Tranekjer LD, Mannering U, Ringgaard M, Frei KM, Willerslev E, Gleba M, Gilbert MTP. Characterising the potential of sheep wool for ancient DNA analyses. Arch. Anth. Sci. 3:209-221, (2011)
Bruhn CAW, Gilbert MTP. HIV-2 down, HIV-1 to go? - Understanding the possibilities of treatment as prevention. Lancet Infectious Diseases 11:260-261, (2011)
Cheung C, Schroeder H, Hedges REM. Diet, social differentiation and cultural change in Roman Britain: new isotopic evidence from Gloucestershire. Arch. Anth. Sci. 4(1), 61–73. doi:10.1007/s12520-011-0083-y, (2011)
Deecke VB, Nykänen M, Foote AD, Janik VM. Vocal behavior and feeding ecology of killer whales (Orcinus orca) around Shetland, UK. Aquatic Biology 13:79-88, (2011)
Duchene S, Archer FI, Vilstrup J, Caballero S, and Morin PA. Mitogenome phylogenetics: The impact of using single regions and partitioning schemes on topology, substitution rate and divergence time estimation. PLoS ONE 6(11): e27138, (2011)
Edwards CJ, Suchard MA, Lemey P, Welch JJ, Barnes I, Fulton TL, Barnett R, O'Connell TC, Coxon P, Monaghan N, Valdiosera CE, Lorenzen ED, Willerslev E, Baryshnikov GF, Rambaut A, Thomas MG, Bradley DG, Shapiro B. Multiple hybridizations between ancient brown and polar bears and an Irish origin for the modern polar bear matriline. Curr. Biol. 21, 1251-1258, (2011)
Enghoff IB. Regionality and biotope exploitation in Danish Ertebølle and adjoining periods. Scientia Danica. Series B, Biologica 1: 1-394. (2011)
Foote AD, Morin PA, Durban JW, Willerslev E, Orlando L, Gilbert MTP. Out of the Pacific and back again: insights into the matrilineal history of Pacific killer whale ecotypes. PLoS ONE 6:e24980, (2011)
Foote AD, Morin PA, Durban JW, Pitman RL, Wade P, Willerslev E, Gilbert MTP, da Fonseca RR. Positive selection on the killer whale mitogenome. Biology Letters 1:116-118, (2011)
Foote AD, Vilstrup JT, de Stephanis R, Verborgh P, Abel Nielsen SC, Deaville R, Kleivane L, Martin V, Miller PJO, Øien N, Perez-Gil M, Rasmussen M, Reid RJ, Robertson KM, Rogan E, Simla T, Tejedor ML, Vester H, Vikingsson GA, Willerslev E, Gilbert MTP, Piertney SB. Genetic differentiation among North Atlantic killer whale populations. Mol. Ecol. 20:629-641, (2011)
Fordyce SL, Avila-Arcos MC, Rockenbauer E, Børsting C, Frank-Hansen R, Torp Petersen F, Willerslev E, Hansen AJ, Morling N, Gilbert MTP. High-throughput sequencing of core STR loci for forensic genetic investigation using the Roche Genome Sequencer FLX platform. Biotechniques 51:127-133, (2011)
Frankel LB, Wen J, Lees M, Høyer-Hansen M, Farkas T, Krogh A, Ja ̈a ̈ttela M, Lund AH. microRNA-101 is a potent inhibitor of autophagy. EMBO Journal, 30(22):4628–4641, Nov 2011
Funder S, Gosse H, Jepsen HF, Kaas E, Kjær KH, Korsgaard NJ, Larsen NK, Linderson H, Lyså A, Möller P, Olsen J, Willerslev E. A 10,000-year record of Arctic Ocean sea ice variability - View from the beach. Science 333, 747-750 (2011)
Funder S, Kjeldsen KK, Kjær KH, Cofaigh CO. The Greenland Ice Sheet During the Past 300,000 Years?: A Review. Natural History, 699-713, (2011), doi:10.1016/B978-0-444-53447-7.00050-7
Gilbert MTP. News and Perspectives: The Mummy Returns...and sheds new light on old questions. Mol. Ecol. 20: 4195-4198, (2011)
Ginolhac A, Rasmussen M, Gilbert MTP, Willerslev E, Orlando L. mapDamage: testing for damage patterns in ancient DNA sequences. Bioinformatics 15:2153-2155, (2011)
Glykou A, Heinrich D, Enghoff IB. Bearbeitete Wirbel von Thunfischen, Thunnus thynnus (L. 1758). Frühneuzeitliche objekte unbekannter function. Offa 63/64, 2006/07 (2011): 209-215
Grønnow B, Gulløv HC, Jakobsen BH, Gotfredsen AB, Kauffmann LH, Kroon A, Pedersen JT, Sørensen M. At the Edge: High Arctic Walrus Hunters during the Little Ice Age. Antiquity 85 (329) September 2011: 960-977
Harvey DJ, Gange AC, Hawes CJ, Rink M,.......Thomsen PF,.......(48 authors total). Bionomics and distribution of the stag beetle, Lucanus cervus (L.) across Europe. Insect Conservation and Diversity 4, 23-38, (2011)
Heide-Jørgensen MP, Garde,E. Fetal growth of narwhals (Monodon monoceros). Marine Mammal Science 27:659-664, (2011)
Houmark-Nielsen M. Pleistocene Glaciations in Denmark: A Closer Look at Chronology, Ice Dynamics and Landforms. In Ehlers J, Gibbard PL, Hughes PD (eds.). Developments in Quaternary Science, Vol. 15, 47-58, (2011)
Houmark-Nielsen M. Geologien i Odsherred, Odsherredbuerne: Et istidslandskab skabt i krydsfeltet mellem tre isstrømme. & Sites: Lavningerne i Odsherred, Nakke-Rørvig Halvøen, Vejrhøjbuen, Gniben, Klint-Ebbeløkke, Korevle og Ordrup Næs. http://www.geopark-odsherred.dk/page5341.aspx (2011)
Kampmann ML, Fordyce SL, Avila-Arcos MC, Rasmussen M, Willerslev E, Nielsen LP, Gilbert MTP. A simple method for the parallel deep sequencing of full influenza A genomes. J. Virological Methods 178:243-248, (2011)
Lalueza-Fox C, Gilbert MTP. Paleogenomics of archaeic hominins. Curr. Biol. 21, R1002–R1009, (2011)
Lalueza-Fox C, Rosas A, Estalrrich A, Gigli E, Campos PF, Garcia-Tabernero A, Garcia-Vargas S, Sanchez-Quinto F, Ramirez O, Civit S, Bastir M, Huguet R, Santamaria D, Gilbert MTP, Willerslev E, de la Rasilla M. Genetic evidence for patrilocal mating behaviour among Neandertal groups. Proc. Natl. Acad. Sci. USA. 108:250-253, (2011)
Lalueza-Fox C, Rosas A, de la Rasilla M, Gilbert MTP, Willerslev E. Reply to Vigilant and Langergraber: Patrilocality in Neandertals is still the most plausible explanation. Proc. Natl. Acad. Sci. USA. 108, E88-E88, (2011)
Larsen NK, Kjær KH, Olsen J, Funder S, Kjeldsen KK, Nørgaard-Pedersen N. Restricted impact of Holocene climate variations on the southern Greenland Ice Sheet. Quat. Sci. Rev. 1-10, (2011). doi:10.1016/j.quascirev.2011.07.022
Lippold S, Knapp M, Kuznetsova T, Leonard JA, Benecke N, Ludwig A, Rasmussen M, Cooper, A, Weinstock J, Willerslev E, Shapiro B. Hofreiter M. Rediscovering the lost diversity of paternal horse lineages using ancient DNA. Nature Communications, 2, 450pp. 2011
Lorenzen ED, Nogués-Bravo, Orlando L, Weinstock J, Binladen J, Marske KA, Ugan A, Borregaard MK, Gilbert MTP, Nielsen R, Ho SYW, Goebel T, Graf KE, Byers D, Stenderup JT, Rasmussen M, Campos PF, Leonard JA, Koepfli K-P, Froese D, Zazula G, Stafford Jr. TW, Aaris-Sørensen K, Batra P, Haywood AM, Singarayer JS, Valdes PJ, Boeskorov G, Burns JA, Davydov SP, Haile J, Jenkins DL, Kosintsev P, Kuznetsova T, Lai X, Martin LD, McDonald HG, Mol D, Meldgaard M, Munch K, Stephan E, Sablin M, Sommer RS, Sipko T, Scott E, Suchard MA, Tikhonov A, Willerslev R, Wayne RK, Cooper A, Hofreiter M, Sher A, Shapiro B, Rahbeck C, Willerslev E. Individualistic species responses to climate and humans determinate Late Quaternary megafaunal extinction and survival. Nature 479:359-364, (2011)
Maldonado E, Dutheil JY, da Fonseca RR, Vasconcelos V, Antunes A. IMPACT: integrated multiprogram platform for analyses in ConTest. J Hered. 2011 May-Jun;102(3):366-9. Epub 2011 Mar 16
Mourier T. Retrotransposon-Centered Analysis of piRNA Targeting Shows a Shift from Active to Passive Retrotransposon Transcription in Developing Mouse Testes. BMC Genomics 12:440, (2011)
Nygaard S, Zhang G, Schiøtt M, Li C, Wurm Y, Hu Y, Zhou J, Ji L, Qiu F, Rasmussen M, Pan H, Hauser F, Krogh A, Grimmelikhuijzen CJ, Wang J, Boomsma JJ. The genome of the leaf-cutting ant Acromyrmex echinatior suggests key adaptations to advanced social life and fungus farming. Genome Res. 21(8):1339–1348, 2011
Olmi L, Maria Mercuri AM, Gilbert MPT, Biagetti S, Fordyce S, Cappellini E, Massamba N’siala I, di Lernia S. Morphological and genetic analyses of early-mid Holocene wild cereals from the Takarkori rockshelter (central Sahara, Libya): first results and prospects. In Reports in African Archaeology; Windows on the African Past; Current approaches to African archaeobotany. Pp. 175-184. 2011. Editor: Catherine D'Andrea
Olsen ME, Bengtsson CF, Bertelsen MF, Willerslev E, Gilbert MTP. DNA from keratinous tissue, part II: Feather. Ann Anat 194:31-35, (2011)
Orton DC, Makowiecki D, de Roo T, Johnstone C, Harland J, Jonsson L, Heinrich D, Enghoff IB, Lougas L, Van Neer W, Ervynck A, Hufthammer AK, Amundsen C, Jones AK, Locker A, Hamilton-Dyer S, Pope P, MacKenzie B, Richards M, O'Connell TC, Barrett JH. Stable isotope evidence for Late Medieval (14th-15th C) origin of the eastern Baltic cod (Gadus morhua) fishery. PloS One 6(11): 1-15. (2011)
Orlando L, Ginolhac A, Raghavan M, Vilstrup J, Rasmussen M, Magnussen K, Steinmann KE, Kapranov P, Thompson JF, Zazula G, Froese D, Moltke I, Shapiro B, Hofreiter M, Al-Rasheid KAS, Gilbert MTP, Willerslev E. True single-molecule DNA sequencing of a Pleistocene horse bone. Genome Res. 21: 1705-1719, (2011)
Pantmann P, Enghoff IB. På dybt vand. Skalk 2011(1): 12-15
Rasmussen M, Guo X, Wang Y, Lohmueller KE, Rasmussen S, Albrechtsen A, Skotte L, Lindgreen S, Metspalu M, Jombart T, Kivisild T, Zhai W, Eriksson A, Manica A, Orlando L, De La Vega F, Tridico S, Metspalu E, Nielsen K, Ávila-Arcos MC, Moreno-Mayar JV, Muller C, Dortch J, Gilbert MTP, Lund O, Wesolowska A, Karmin M, Weiner LA, Wang B, Li J, Tai S, Xiao F, Hanihara T, van Driem G, Jha AR, Ricaut F-X, de Knijff P, Migliano AB, Gallego-Romero I, Kristiansen K, Lambert DM, Brunak S, Forster P, Brinkmann B, Nehlich O, Bunce M, Richards M, Gupta R, Bustamante C, Krogh A, Foley RA, Lahr MM, Balloux F, Sicheritz-Pontén T, Villems R, Nielsen R, Jun W, Willerslev E. An Aboriginal Australian genome reveals separate human dispersals into Asia. Science 334:94-98, (2011)
Razgour O, Clare EL, Zeale MRK, Schnell IB, Rasmussen M, Gilbert MTP, Jones. High-throughput sequencing offers insight into mechanisms of resource partitioning in cryptic bat species. Ecology and Evolution, 1, 556-70 (2011)
Rehn N, Filatova OA, Durban JW, Foote AD. Cross-cultural and cross-ecotype production of a killer whale ‘excitement' call suggests universality. Naturwissenschaften 98:1-6, (2011)
Stouge S, Christiansen JL, Harper, DAT, Houmark-Nielsen M, Kristiansen K, MacNiocaill C, Buchardt-Westergaard, B. Neoproterozoic (Cryogenian-Ediacaran) deposits in East and North-East Greenland. Geological Society, London, Memoirs 2011; v. 36; p. 581-592, doi: 10.1144/M36.56
Takamiya M, Ozen A, Rasmussen M, Alter T, Gilbert MTP, Ussery DW, Knøchel S. Genome Sequence of Campylobacter jejuni strain 327, a strain isolated from a turkey slaughterhouse. Std. gen. sci., 4, 113-122, 2011
Takamiya M, Ozen A, Rasmussen M, Alter T, Gilbert MTP, Ussery DW, Knøchel S. Genome Sequences of Two Stress-Tolerant Campylobacter jejuni Poultry Strains, 305 and DFVF1099. J. Bacterology, 193, 5546-7. 2011
Tange O. GNU Parallel - The Command-Line Power Tool. ;login: The USENIX Magazine, February 2011:42-47
Tange O. GNU SQL - A Command Line Tool for Accessing Different Databases Using DBURLs. ;login: The USENIX Magazine, April 2011:29-32
Ukkonen P, Aaris-Sørensen K, Arppe L, Clark PU, Daugnora L, Lister AM, Lõugas L, Seppä H, Sommer RS, Stuart AJ, Wojtal P, Zupins I. Woolly mammoth (Mammuthus primigenius Blum.) and its environment in northern Europe during the last glaciation. Quat. Sci. Rev. 30: 693-712, (2011)
Van Doorn N, Wilson A, Willerslev E, Gilbert MTP. Bone marrow and bone as a source for post-mortem RNA. J. Forensic Science 56:720-725, (2011)
Vilstrup JT, Ho SYW, Foote AD, Morin PA, Kreb D, Krützen M, Parra GJ, Robertson KM, de Stephanis R, Verborgh P, Willerslev E, Orlando L, Gilbert MTP. Mitogenomic phylogenetic analyses of the Delphinidae with an emphasis on the Globicephalinae. BMC Evol. Biol. 11:65, (2011)
Waters MR, Stafford Jr. TW, McDonald GH, Gustafson C, Rasmussen M, Cappellini E, Olsen JV, Szklarczyk D, Juhl Jensen L, Gilbert MTP, Willerslev E. Pre-Clovis mastodon hunting 13,800 years ago at the Manis site, Washington: Implications for explaining the extinction of megafauna at the end of the Pleistocene. Science 334:351-353, (2011)
White NE, Phillips MJ, Gilbert MTP, Alfaro-Nuñes A, Willerslev E, Mawson PR, Spencer PBS, Bunce M. The evolutionary history of Cockatoos (Psittaciformes: Cacatuidae). Mol. Phyl. Evol. 59:615-622, (2011)
Wen J, Parker BJ, Jacobsen A, Krogh A. MicroRNA transfection and AGO-bound CLIP-seq data sets reveal distinct determinants of miRNA action. RNA, 17(5):820–834, May 2011
Wiig Ø, Heide-Jørgensen MP, Laidre KL, Garde E, Reeves RR. Geographic variation in cranial morphology of narwhals (Monodon monoceros) from Greenland and the eastern Canadian Arctic. Polar Biology 35:63-71
Publications 2010
Alley RB, Andrews JT, Brigham-Grette J, Clarke GKC, Cuffey KM, Fitzpatrick JJ, Funder S, Marshall SJ, Miller GH, Mitrovica JX, Muhs DR, Otto-Bliesner BL, Polyak L. History of the Greenland Ice Sheet: Paleoclimatic insights. Quaternary Science Reviews 29, 1728-1756, (2010)
Axelsson E, Albrechtsen A, van AP, Li L, Megens HJ, Vereijken ALJ, Crooijmans RPMA, Groenen MAM, Ellegren H, Willerslev E, Nielsen R. Segregation distortion in chicken and the evolutionary consequences of female meiotic drive in birds. Heredity 105, 290-298 (2010)
Binladen J. and Willerslev E. "Why study ancient DNA damage?" J. Nordic Archaeological Science 17, 11-14 (2010)
Campos PF, Willerslev E, Mead JI, Hofreiter M, Gilbert MTP. Molecular identification of the extinct mountain goat, Oreamnos harringtoni (Bovidae). Boreas 39, 18-23 (2010)
Campos P, Willerslev E, Sher A, Orlando L, Axelsson E, Tikhonov A, Aaris-Sørensen K, Greenwood A, Kahlke R-D, Kosintsev P, Krakhmalnaya T, Kuznetsova T, Lemey P, MacPhee R, Norris CA, Shephard K, Suchard MA, Zazula GD, Shapiro B, Gilbert MTP. Ancient DNA analyses exclude humans as the driving force behind late Pleistocene musk ox (Ovibos moschatus) population dynamics. Proc. Natl. Acad. Sci. USA. 105:8327- 8332, (2010)
Campos PF, Kristensen T, Orlando L et al. Ancient DNA sequences point to a large loss of mitochondrial genetic diversity in the saiga antelope (Saiga tatarica) since the Pleistocene. Mol. Ecol. 19 (22): 4863-4875, (2010)
Campos PF, Sher A, Mead JI et al. Clarification of the taxonomic relationship of the extant and extinct ovibovids, Ovibos, Praeovibos, Euceratherium and Bootherium. Quaternary Science Reviews 29, 2123-2130, (2010)
Cappellini E, Gilbert MTP, Geuna F, Fiorentino G, Hall A, Thomas-Oates J, Ashton P Ashford D, Arthur P, Campos P, Kool J, Willerslev E, Matthew M. A multidisciplinary study of archaeological grape seeds. Naturwissenschaften 97, 205-217 (2010)
Charlier P, Huynh-Charlier I, Poupon J, Keyser C, Lancelot E, Favier D, Vignal J, Sorel P, Chaillot P, Boano R, Grilleto R, Delacourt S, Duriez J, Loublier Y, Campos PF et al. Multidisciplinary medical identification of a French king's head (Henri IV). BMJ, 341, (2010)
Charlier P, Poupon J, Eb A, De Mazancourt P, Gilbert T, Huynh-Charlier I, Loublier Y, Verhille AM, Moulheirat C, Patou-Mathis M, Robbiola L, Montagut R, Masson F, Etcheberry A, Brun L, Willerslev E, Lorin de la Grandmaison G, Durigon M. The 'relics of Joan of Arc': A forensic multidisciplinary analysis. Forensic Sci. Int. 194, e9-15 (2010)
Ehrlich H, Deutzmann R, Brunner E, Cappellini E, Koon H, Solazzo C, Yang Y, Ashford D, Thomas-Oates J, Lubeck M, Baessmann C, Langrock T, Hoffmann R, Wörheide G, Reitner J, Simon P, Tsurkan M, Ereskovsky AV, Kurek D, Bazhenov VV, Hunoldt S, Mertig M, Vyalikh DV, Molodtsov SL, Kummer K et al. Mineralization of the metre-long biosilica structures of glass sponges is templated on hydroxylated collagen. Nature Chemistry 2: 1084–1088, (2010)
Funder S, Kjeldsen KK, Kjær KH. The Greenland ice sheet during the last 300,000 years: a review. Development in Quaternary Sciences (Ed. Ehlers). (2010). 23 pages
Gotfredsen AB. Faunal Remains from the Wollaston Forland – Clavering Ø Region, Northeast Greenland - Thule Culture Subsistence in a High Arctic Polynya and Ice-edge Habitat. Geografisk Tidsskrift-Danish Journal of Geography 110(2): 175-200. (2010)
Gregersen LH, Jacobsen AB, Frankel LB, Wen J, Krogh A, Lund AH. MicroRNA-145 targets YES and STAT1 in colon cancer cells. PLoS One. 2010 Jan 21;5(1):e8836
Houmark-Nielsen, M. Extent, age and dynamics of Marine Isotope Stage 3 glaciations in the southwestern Baltic Basin. Boreas 39, 343-359. 2010
Jacobsen A, Wen J, Marks DS, Krogh A. Signatures of RNA binding proteins globally coupled to effective mcroRNA target sites. Genome Res. 2010 Aug;20(8):1010-9. Epub 2010 May 27
Jacobsen A, Krogh A, Kauppinen S, Lindow M. miRMaid: a unified programming interface for microRNA data resources. BMC Bioinformatics. 2010 Jan 14;11:29
Jakobsson M, Long A, Ingólfsson Ó, Kjær KH, Speilhagen RF. New insights on Arctic Quaternary climate variability from palaeo-records and numerical modelling. Quat. Sci. Rev. 29: 3349, (2010)
Lalueza-Fox C, Rosas A, Estalrrich A, Gigli E, Campos PF et al. Genetic evidence for patrilocal mating behavior among Neandertal groups. Proc.Natl. Acad. Sci. (2010) doi:10.1073/pnas.1011553108
Lari M, Rizzi E, Milani L, Corti G, Balsamo C, Vai S, Catalano G, Pilli E, Longo L, Condemi S, Giunti P, Hanni C, De Bellis G, Orlando L, Barbujani G, Caramelli D. The microcephalin ancestral allele in a Neanderthal individual. PloS ONE 5(5):e10648, (2010)
Larsen NK, Kjær KH, Funder S, Möller P. van der Meer JJM, Schomacker A, Linge H, Darby DA. Late Quaternary glaciation history of northernmost Greenland – evidence of shelf-based ice. Quat. Sci. Rev. 29: 3399, (2010)
Lira J, Linderholm A, Olaria C, Brandström Durling M, Gilbert MT, Ellegren H, Willerslev E, Lidén K, Arsuaga JL, Götherström A. Ancient DNA reveals traces of neolithic and Bronze age lineages in modern Iberian horses. Mol. Ecol. 19, 64-78 (2010)
Lorenzen ED, Willerslev E. King Tutankhamun’s Family and Demise. Journal of the American Medical Association (JAMA) 303, 2471 (2010)
Miller GH, Brigham-Grette J, Alley RB, Anderson L, Bauch HA, Douglas MSV, Edwards ME, Elias SA, Finney BP, Fitzpatrick JJ, Funder S, Herbert TD, Hinzman LD, Kaufman DS, MacDonald GM, Polyak L, Robock A, Serreze MC, Smol JP, Spielhagen R, White JWC, Wolfe AP, Wolff EW. Temperature and precipitation history of the Arctic. Quat. Sci. Rev. 29, 1679-1715, (2010)
Millard A, Schroeder H. True British Sailors: A comment on the origin of the men of the Mary Rose. Journal of Archaeological Science 37: 680-682, (2010)
Morin PA, Archer FA, Foote AD, Vilstrup J, Allen EA, Wade P, Durban J, Parsons K, Pitman R, Li L, Bouffard P, Nielsen SCA, Rasmussen M, Willerslev E, Gilbert MTP, Harkins T. Complete mitochondrial genome phylogeographic analysis of killer whales (Orcinus orca) indicates multiple species. Genome Res. 20, 908-916, (2010)
Moro ML, Collins MJ, Cappellini E. Alzheimer’s disease and amyloid β-peptide deposition in the brain: a matter of ‘aging’? Biochem. Soc. Trans. 38(2): 539-44, (2010)
Mourier T, Willerslev E. Large-scale transcriptome data reveals transcriptional activity of fission yeast LTR retrotransposons. BMC Genomics 11, 167 (2010)
Möller P, Larsen NK, Kjær KH, Funder S, Schomacker A, Linge A. Fabel D. Early to middle Holocene valley glaciations on northernmost Greenland. Quat. Sci. Rev. 29: 3379, (2010)
Nygaard S, Braunstein A, Malsen G, Van Dongen S, Gardner PP, Krogh A, Otto TD, Pain A, Berriman M, McAuliffe J, Dermitzakis ET, Jeffares DC. Long- and short-term selective forces on malaria parasite genomes. PLoS Genet. 2010 Sep 9;6(9). pii: e1001099
Oskam CL, Haile J, McLay E, Rigby P, Allentoft ME, Olsen ME, Bengtsson C, Miller GH, Schwenninger JL, Jacomb C, Walter R, Baynes A, Dortch J, Parker-Pearson M, Gilbert MT, Holdaway RN, Willerslev E, Bunce M. Fossil avian eggshell preserves ancient DNA. Proc. Royal Soc. Lon. B. 277, 1991-2000 (2010)
Papageorgopoulou C, Rentsch K, Raghavan M, Hofmann MI, Colacicco G, Gallien V, Bianucci R, Rühli F. Preservation of cell structures in a medieval infant brain: a paleohistological, paleogenetic, radiological and physico-chemical study. Neuroimage 50(3): 893-901, (2010)
Polyak L, Alley RBR, Andrews JT, Brigham-Grette J, Cronin TM, Darby DA. Dyke AS, Fitzpatrick J, Funder S, Holland M, Jennings AE, Miller GH, O’Regan M, Savelle J, Serreze M, St. John K, White J, Wolff E. History of sea ice in the Arctic. Quat. Sci. Rev. 29, 1757-1778, (2010)
Raghavan M, McCullagh JS, Lynnerup N, Hedges RE. Amino acid delta 13C analysis of hair proteins and bone collagen using liquid chromatography/isotope ratio mass spectrometry: paleodietary implications from intra-individual comparisons. Rapid Communications in Mass Spectrometry 24(5): 541-548, (2010)
Rasmussen M, Li Y, Lindgreen S, Pedersen JS, Albrechtsen A, Moltke I, Metspalu M, Metspalu E, Kivisild T, Gupta R, Bertalan M, Nielsen K, Gilbert MTP, Wang Y, Raghavan M, Campos PF, Kamp HM, Wilson AS, Gledhill A, Tridico S, Bunce M, Lorenzen ED, Binladen J, Guo X, Zhao J, Zhang X, Zhang H, Li Z, Chen M, Orlando L, Kristiansen K, Bak M, Tommerup N, Bendixen C, Pierre TL, Grønnow B, Meldgaard M, Andreasen C, Dedorova SA, Osipova LP, Higham TFG, Bronk Ramsay C, Hansen T v O, Nielsen FC, Crawford MH, Brunak S, Sicheritz-Pontén T, Villems R, Nielsen R, Krogh A, Wang J, Willerslev E. Ancient human genome sequence of an extinct Palaeo-Eskimo. Nature 463: 757-762, (2010)
Rodriguez M, Edsgard D, Sarfraz H, Alquezar D, Rasmussen M, Gilbert MTP, Nielsen B, Bartels D, Mundy J. Transcriptomes of the desiccation tolerant resurrection plant Craterostigma plantagineum. The Plant J. 63, 212-228 (2010)
Schlumbaum A, Campos PF, Volken S et al. Ancient DNA, a Neolithic legging from the Swiss Alps and the early history of goat. J. Archaeol. Sci. 37, 1247-1251, (2010)
Schnell IB, Fraser M, Willerslev E, Gilbert MTP. Characterisation of insect and plant origins using DNA extracted from small volumes of bee honey. Arthropod-Plant Interactions 4, 107-116 (2010)
Sønstebrø JH, Gielly L, Brysting AK, Elven R, Edwards M, Haile J, Willerslev E, Croissac E, Rioux D, Sannier J, Taberlet P, Brochmann C. Using next-generation sequencing for molecular reconstruction of past Arctic vegetation and climate. Mol. Ecol. Res. 10, 1009-1018 (2010)
Willerslev E. On the Brink of Extinction. Trends. Ecol. Evol. 25, 265 – 266 (2010)
Publications 2009
Allentoft ME, Scuster SC, Holdaway RN, Hale M, McLay E, Oskam C, Gibert MTP, Spencer P, Willerslev E, Bunce M. Identification of microsatellites from an extinct moa species using high throughput sequence data. BioTechniques 3,195-200, (2009)
Bartoli L, Fariselli P, Krogh A, Casadio R. CCHMM_PROF: a HMM-basedcoiled-coil predictor with evolutionary information. Bioinformatics, 2009 Nov 1;25(21):2757-63
Benediktsson ÍÖ, Ingólfsson Ó, Schomacker A, and Kjær KH. Formation of submarginal and proglacial end moraines: implications of iceflow mechanism during the 1963-64 surge of Brúarjökull, Iceland. Boreas 38, 440-457, (2009)
Bunce M, Worthy TH, Phillips MJ, Holdaway RN, Willerslev E, Haile J, Shapiro B, Scofield RP, Drummond A, Kamp PJJ, Cooper A. The evolutionary history of the extinct ratite moa and New Zealand Neogene paleogeography. Proc. Natl. Acad. Sci. USA. 106, 20646-20651 (2009)
Campos PF, Willerslev E and Gilbert MTP. Isolation of DNA from ancient samples. In: Handbook of nucleic acids purification. (Ed. Don Liu), 441-461 (2009)
Enghoff, I.B. Fiskeri fra jernalderbopladsen Nørre Hedegård. Pp. 236-246 in Runge, M. (ed.): Nr. Hedegård. En nordjysk byhøj fra ældre jernalder. Jysk Arkæologisk Selskabs Skrifter. Højbjerg. (2009)
Enghoff, I.B. Dyreknogler fra Ronæs Skov-bopladsen. Pp. 243-271 in: Andersen, S.H. (ed.) Ronæs Skov. Marinarkæologiske undersøgelser af kystboplads fra Ertebølletid. Jysk Arkæologisk Selskab. (2009)
Foote AD, Newton J, Piertney SB, Willerslev E, Gilbert MTP. Ecological, morphological and genetic divergence of sympatric North Atlantic killer whale populations. Mol. Ecol. 18, 5207-5217 (2009)
Funder SV, Michelutti N, Simonetti A, Briner J, Creaser RA, Wolfe AP. Temporal trends of pollution Pb and other metals in east-central Baffin Island inferred from lake sediment geochemistry. Science of the Total Environment. 2009 ; vol. 407, 7-7-2009. s. 5653-5662
Gigli E, Rasmussen M, Civit S, Rosas A, de la Rasilla M, Fortea J, Gilbert MTP, Willerslev E, Lalueza-Fox C. An improved PCR method for endogenous DNA retrieval in contaminated Neandertal samples based on the use of blocking primers. J. Archaeol. Sci. 36, 2676-2679 (2009)
Gilbert MTP, Jenkins DL, Higham TFG, Rasmussen M, Malmström H, Svensson EM, Sanchez JJ, Cummings LS, Yohe II RM, Hofreiter M, Götherström A, Willerslev E. Response to Comment on "Pre-Clovis Human Coprolites in Oregon, North America” by Poinar H. et al. Science 325, 148 (2009)
Haile J, Froese DG, MacPhee RDE, Roberts RG, Arnold LJ, Reyes AV, Rasmussen M, Nielsen R, Brook BW, Robinson S, Demuro M, Gilbert MTP, Munch K, Austin JJ, Cooper A, Barnes I, Möller P, Willerslev E. Ancient DNA reveals late survival of mammoth and horse in interior Alaska. Proc. Natl. Acad. Sci. USA. 106, 22352-22357 (2009)
Hebsgaard MB, Arneborg J, Gilbert MTP, Heyn P, Allentoft ME, Bunce M, Munch K, Schweger C, Willerslev E. “The Farm Beneath the Sand” – An Archaeological Case Study on Ancient “Dirt” DNA. Antiquity 83, 430-444 (2009)
Houmark-Nielsen M. MIS 3 interstadial climate and rapid ice advances in the Baltic Basin, Swedish Nuclear Fuel and Waste Management. SKB-P- 09-10, (2009), Stockholm
Houmark-Nielsen M. Extent, age and dynamics of Marine Isotope Stage 3 glaciations in the southwestern Baltic Basin. Boreas vol.39, 10.1111/j.1502-3885.2009.00136.x.ISSN 0300-9483 (2009)
Steeman, M.E. A new baleen whale from the Late Miocene of Denmark and early mysticete hearing. Palaeontology, 52, 1169–1190 (2009)
Katzourakis A, Gifford RJ, Tristem M, Gilbert MTP, Pybus OG. The macroevolution of complex retroviruses. Science 325:1512 (2009)
King GA, Gilbert MTP, Willerslev E, Collins MJ, Kenward HK. Recovery of DNA from archaeological insect remains: first results, problems and potential. J. Arch. Sci. 36, 1179 1183 (2009)
Krüger J, Kjær KH, Schomacker A. Dead-ice Environments: a Landsystems Model for a Debris-charged Stagnant Lowland Glacier Margin, Kötlujökull. In: The Mýrdalsjökull ice cap, Iceland: glacial processes, sediments and landforms on an active volcano. (Ed. by Schomacker A et al.). Developments in Quaternary Science 13 (2009). Elsevier, Amsterdam. Pp. 105-126
Krüger J, Schomacker A, Kjær KH. The Mýrdalsjökull Ice Cap, Iceland: Glacial Processes, Sediments and Landforms on an Active Volcano: An Introduction. In: The Mýrdalsjökull ice cap, Iceland: glacial processes, sediments and landforms on an active volcano. (Ed. by A. Schomacker et al.). Developments in Quaternary Science 13 (2009). Elsevier, Amsterdam. Pp. 1-3
Malmström H, Gilbert MTP, Thomas MG, Brandström M, Storå J, Molnar P, Andersen PK, Bendixen C, Holmlund G, Götherström A, Willerslev E. Ancient DNA Reveals lack of Continuity between Neolithic Hunter-gatherers and Contemporary Scandinavians. Curr. Biol. 19, 1758 – 1762 (2009)
Mourier T, Willerslev E. Retrotransposons and non-protein coding RNAs. Brief Funct. Genomic Proteomic 8, 493-501 (2009)
Rasmussen M, Cummings LS, Gilbert MTP, Bryant V, Smith C, Jenkins DL, Willerslev E. Response to Comment on "Pre-Clovis Human Coprolites in Oregon, North America” by Goldberg P. et al. Science 325, 148 (2009)
Schomacker, A., Kjær, K.H. & Krüger, J. Subglacial Environments, Sediments and Landforms at the Margins of Mýrdalsjökull. In: The Mýrdalsjökull ice cap, Iceland: glacial processes, sediments and landforms on an active volcano. (Ed. by Schomacker A et al.). Developments in Quaternary Science 13 (2009). Elsevier, Amsterdam. Pp. 127-144
Schroeder H, O'Connell TC, Evans J, Shuler K and Hedges REM. Trans-Atlantic slavery: Isotopic evidence for forced migration to Barbados. American Journal of Physical Anthropology 139: 547-557, (2009)
Solazzo C, Fitzhugh W, Loring S, Cappellini E, Gilbert MTP, Willerslev E, Penkman K, Collins MJ. What’s in the pot? Multiple approaches to the analysis and interpretation of organi residues in ceramics from the Iñupiat culture, Point Barrow, Alaska. Antiquity 83, 430–444 (2009)
Steeman ME, Hebsgaard MB, Fordyce RE, Ho SYW, Rabosky DL, Nielsen R, Rahbek C, Glenner H, Sørensen MV, Willerslev E. Radiation of Extant Cetaceans Driven by Restructuring of the Oceans. Syst. Biol. 58, 573-585 (2009)
Thomsen PF, Elias S, Gilbert MTP, Munch K, Kuzmina S, Sher A, Haile J, Holdaway R, Willerslev E. Non-destructive sampling of ancient insect DNA. PLoS ONE 4, e5048 (2009)
Valen E, Sandelin A, Winther O, Krogh A. Discovery of regulatory elements is improved by a discriminatory approach. PLoS Comput Biol. 2009 Nov;5(11):e1000562. Epub 2009 Nov 13
van der Meer JJM, Kjær KH, Krüger J, Rabassa J, Kilfeather AA. Under pressure: Clastic dykes in glacial settings. Quaternary Science Reviews 28, 708-720. (2009)
van der Meer JJM, Carr SJ, Kjær KH. Mýrdalsjökull’s Forefields Under the Microscope. The Micromorphology of Meltout and Subglacial Tills. In: The Mýrdalsjökull ice cap, Iceland: glacial processes, sediments and landforms on an active volcano. (Ed. by Schomacker A et al.). Developments in Quaternary Science 13, (2009). Elsevier, Amsterdam. Pp. 159-180
Weinstock J, Prieto A, Shapiro B, Gilbert MTP, Marin JC, Gonzalez B, Willerslev E. The Late Pleistocene distribution of vicuñas (Vicugna vicugna) and the “extinction” of the gracile llama (“Lama gracilis”): new molecular data. Quat. Sci. Rev. 28, 1369-1373 (2009)
Willerslev E, Gilbert MTP, Binladen B, Ho SYW, Campos PF, Ratan A, Tomsho LP, da Fonseca RR, Sher A, Kuznetsova TV, Nowak-Kemp M, Roth TL, Miller W, Schuster SC. Analysis of complete mitochondrial genomes from extinct and extant rhinoceroses reveals lack of phylogenetic resolution. BMC Evol. Biol. 9, 95 (2009)
Aaris-Sørensen K. Diversity and dynamics of the mammalian fauna in Denmark throughout the last glacial-interglacial cycle, 115-0 kyr BP. Fossils and Strata 57: 1-59, (2009)
