Publications

In press 2011

Andersen K, Bird KL, Rasmussen M, Haile J, Breuning-Madsen H, Kjær KH, Orlando L, Gilbert MTP, Willerslev E (in press): Meta-barcoding of ‘dirt' DNA from soil reflects vertebrate biodiversity. Mol Ecol

Brüniche-Olsen A, Gravlund P, Lorenzen ED (in press): Impact of genetic drift and restricted gene flow in indigenous cattle breeds: evidence from the Jutland breed. Animal Genetic Resources

Christina Cheung, Hannes Schroeder, Robert E. M. Hedges (in press): Diet, social differentiation and cultural change in Roman Britain: new isotopic evidence from Gloucestershire. Archaeol Anthropol Sci

Foote AD, Hofreiter M, Morin PA (in press): Ancient DNA and marine mammals: Studying long-lived species over ecological and evolutionary timescales. Annals of Anatomy

Jørgensen T, Haile J, Möller P, Andreev A, Boessenkool S, Rasmussen M, Kienast F, Coissac E, Taberlet P, Brochmann C, Bigelow N, Andersen K, Orlando L, Gilbert MTP, Willerslev E (in press): A comparative study of ancient sedimentary DNA, pollen and macrofossils from permafrost sediments of Northern Siberia reveals long-term vegetational stability. Mol Ecol

Jørgensen T, Kjær K, Haile J, Rasmussen M, Boessenkool S, Andersen K, Coissac E, Taberlet P, Brochmann C, Orlando L, Gilbert MTP, Willerslev E (in press): Islands in the Ice: detecting past vegetation on Greenlandic Nunataks using historical records and sedimentary ancient DNA meta-barcoding. Mol Ecol

Lalueza-Fox C, Gilbert MTP (in press): Paleogenomics of archaeic hominins. Current Biology 

Razgour O, Clare EL, Zeale MRK, Bærholm Schnell I, Rasmussen M, Gilbert MTP, Jones G (in press): High-throughput sequencing offers insight into mechanisms of resource partitioning in cryptic bat species. Ecology and Evolution

Publications 2011

Allentoft ME, Oskam C, Houston J, Hale ML, Gilbert MTP, Rasmussen M, Spencer P, Jacomb C, Willerslev E, Holdaway RN, Bunce M (2011): Profiling the dead: Generating microsatellite data from fossil bones of extinct megafauna - protocols, problems and prospects. PLoS ONE 6:e16670

Andresen, C.S, Straneo, F., Ribergaard, M.H., Bjørk, A.A., Andersen, T.J., Kuijpers, A., Nørgaard-Petersen, N., Kjær, K.H., Schjøt, F., Weckström, K., Ahlstrøm, A.P. (2012): Rapid response of Helheim Glacier in Greenland to climate variability over the past century. Nature Geoscience, vol. 5, pp. 37-41. (Online 2011)

Arnold L, Roberts RG, MacPhee RDE, Haile JS, Brock F, Möller P, Froese DG, Tikhonov AN, Chivas AR, Gilbert MTP, Willerslev E (2011): Dirt, dates and DNA: OSL and radiocarbon chronologies of perennially-frozen sediments in Siberia, and their implications for sedimentary ancient DNA studies. Boreas 40:417-445

Arppe, L., Aaris-Sørensen, K., Daugnora, L., Lõugas, L., Wojtal, P. & Zupins, I. (2011): The palaeoenvironmental delta13C record in European woolly mammoth. Quaternary International 245:285-290

Ávila-Arcos MC, Cappellini E, Romero-Navarro JA, Wales N, Moreno-Mayar JV, Rasmussen M, Fordyce SL, Montiel R, Vielle-Calzada J-P, Willerslev E, Gilbert MTP (2011): Application and comparison of large-scale solution-based DNA capture-enrichment methods on ancient DNA. Scientific Reports 1:74

Baret F, Bringer F, Busti D, Carpentier A, Caudron N, Charrier C, Celle F, Daoust G, Froissart H, Geray L, Jalabert S, Mauffrey A, Olive C, Picoche J.-M., Rebulard S, Salomon L, Seguin-Orlando A, Seyed R, Thébault P.-O., Vigier S and Woerle A. Editor: Belin: SVT 1re S. A French textbook, for before-last year of high-school (scientific sections), on Natural and Earth Sciences, 335 pages, April 2011.

Barrett J, Orton D, Johnstone C, Harland J, Van Neer W, Ervynck A, Roberts C, Locker A, Amundsen C , Enghoff I. B , Hamilton-Dyer S, Heinrich D, Hufthammer A, Jones A, Jonsson L, Makowiecki D, Pope P, O'Connell T, De Roo T & Richards M (2011): Interpreting the expansion of sea fishing in medieval Europe using stable isotope analysis of archaeological cod bones. Journal of Archaeological Science , vol 36, nr. 7, s. 1516-1524.

Beck S, Kuningas S, Esteban-Pavo R, Foote AD (2011): The influence of ecology on sociality in the killer whale (Orcinus orca). Behavioral Ecology. doi: 10.1093/beheco/arr151. First published online: October 10, 2011

Bengtsson CF, Olsen ME, Brandt LØ, Bertelsen MF, Willerslev E, Tobin DJ, Wilson AS, Gilbert MTP (2011): DNA from keratinous tissue, part I: Hair and nail. Annals of anatomy = Anatomischer Anzeiger : official organ of the Anatomische Gesellschaft.

Bjørk, A.A, Björck, S., Cronholm, A, Haile, J., Ljung, K. & Porter, C. (2011): Possible Late Pleistocene volcanic activity on Nightingale Island, South Atlantic Ocean, based on geoelectrical resistivity measurements, sediment corings and 14C dating. GFF, vol. 133, Issue 3-4, pp. 141-147.

Bohmann K, Monadjem A, Noer C, Rasmussen M, Zeale M, Clare E, Jones G, Willerslev E, Gilbert MTP (2011): Molecular diet analysis of two African free-tailed bats (Molossidae) using high throughput sequencing. PLoS ONE 6:e21441

Brandt LØ, Tranekjer LD, Mannering U, Ringgaard M, Frei KM, Willerslev E, Gleba M, Gilbert MTP (2011): Characterising the potential of sheep wool for ancient DNA analyses. Arch Anth Sci 3:209-221

Bruhn CAW, Gilbert MTP (2011): HIV-2 down, HIV-1 to go? - Understanding the possibilities of treatment as prevention. Lancet Infectious Diseases 11:260-261

Campos PF, Craig OE, Turner-Walker G, Peacock E, Willerslev E, Gilbert MTP (2011): DNA in ancient bone - where is it located and how should we extract it? Annals of anatomy = Anatomischer Anzeiger : official organ of the Anatomische Gesellschaft.

Cappellini E, Jensen L, Szklarczyk D, Ginholac A, da Fonseca R, Stafford T, Holven S, Collins M, Orlando L, Willerslev E, Gilbert MTP, Olsen JV (2011): Proteomic analysis of a Pleistocene mammoth femur reveals more than one hundred ancient bone proteins. Journal of Proteomic Research

Deecke VB, Nykänen M, Foote AD, Janik VM (2011): Vocal behavior and feeding ecology of killer whales (Orcinus orca) around Shetland, UK. Aquatic Biology 13:79-88

Edwards CJ, Suchard MA, Lemey P, Welch JJ, Barnes I, Fulton TL, Barnett R, O'Connell TC, Coxon P, Monaghan N, Valdiosera CE, Lorenzen ED, Willerslev E, Baryshnikov GF, Rambaut A, Thomas MG, Bradley DG, Shapiro B (2011): Multiple hybridizations between ancient brown and polar bears and an Irish origin for the modern polar bear matriline. Current Biology 21, 1251-1258.

Enghoff I.B (2011): Regionality and biotope exploitation in Danish Ertebølle and adjoining periods. Scientia Danica. Series B, Biologica. Vol 1. Det Kongelige Danske Videnskabernes Selskab. Pp. 394

Foote AD, Morin PA, Durban JW, Willerslev E, Orlando L, Gilbert MTP (2011): Out of the Pacific and back again: insights into the matrilineal history of Pacific killer whale ecotypes. PLoS ONE 6:e24980

Foote AD, Morin PA, Durban JW, Pitman RL, Wade P, Willerslev E, Gilbert MTP, da Fonseca RR (2011): Positive selection on the killer whale mitogenome. Biology Letters 1:116-118

Foote AD, Vilstrup JT, de Stephanis R, Verborgh P, Abel Nielsen SC, Deaville R, Kleivane L, Martin V, Miller PJO, Øien N, Perez-Gil M, Rasmussen M, Reid RJ, Robertson KM, Rogan E, Simla T, Tejedor ML, Vester H, Vikingsson GA, Willerslev E, Gilbert MTP, Piertney SB (2011): Genetic differentiation among North Atlantic killer whale populations. Molecular Ecology 20:629-641

Fordyce SL, Avila-Arcos MC, Rockenbauer E, Børsting C, Frank-Hansen R, Torp Petersen F, Willerslev E, Hansen AJ, Morling N, Gilbert MTP (2011): High-throughput sequencing of core STR loci for forensic genetic investigation using the Roche Genome Sequencer FLX platform. Biotechniques 51:127-133

Funder S, Gosse H, Jepsen, Kaas E, Kjær KJ, Korsgaard NJ, Larsen NK, Linderson H, Lyså A, Möller P, Olsen J, and Willerslev E.: A 10,000-year record of Arctic Ocean sea ice variability - View from the beach. Science 333, 747-750 (2011)

Funder, S., K. K. Kjeldsen, K. H. Kjær, and C. O (2011): The Greenland Ice Sheet During the Past 300,000 Years?: A Review. Natural History, 699-713, doi:10.1016/B978-0-444-53447-7.00050-7.

Gilbert MTP (2011): News and Perspectives: The Mummy Returns...and sheds new light on old questions. Mol Ecol 20: 4195-4198

Ginolhac A, Rasmussen M, Gilbert MTP, Willerslev E, Orlando L (2011): mapDamage: testing for damage patterns in ancient DNA sequences. Bioinformatics 15:2153-2155

Glykou A, Heinrich D. & Enghoff I.B. (2011): Bearbeitete wirbel von thunfischen, Thunnus thynnus (L. 1758). Frühneuzeitliche objekte unbekannter function. Offa 63/64, 2006/07 (2011) p. 209-215

Harvey DJ, Gange AC, Hawes CJ, Rink M,.......Thomsen PF,.......(48 authors total) (2011): Bionomics and distribution of the stag beetle, Lucanus cervus (L.) across Europe. Insect Conservation and Diversity 4, 23-38

Heide-Jørgensen MP, Garde,E (2011): Fetal growth of narwhals (Monodon monoceros). Marine Mammal Science 27:659-664

Houmark-Nielsen, M. (2011): Pleistocene Glaciations in Denmark: A Closer Look at Chronology, Ice Dynamics and Landforms. In J. Ehlers, P.L. Gibbard and P.D. Hughes, editors: Developments in Quaternary Science, Vol. 15, 47-58

Kampmann M-L, Fordyce SL, Avila-Arcos MC, Rasmussen M, Willerslev E, Nielsen LP, Gilbert MTP (2011): A simple method for the parallel deep sequencing of full influenza A genomes. J Virological Methods 178:243-248

Lalueza-Fox C, Rosas A, Estalrrich A, Gigli E, Campos PF, Garcia-Tabernero A, Garcia-Vargas S, Sanchez-Quinto F, Ramirez O, Civit S, Bastir M, Huguet R, Santamaria D, Gilbert MTP, Willerslev E, de la Rasilla M (2011): Genetic evidence for patrilocal mating behaviour among Neandertal groups. Proc Natl Acad Sci USA 108:250-253

Larsen, N. K., K. H. Kjær, J. Olsen, S. Funder, K. K. Kjeldsen, and N. Nørgaard-pedersen (2011): Restricted impact of Holocene climate variations on the southern Greenland Ice Sheet. Quaternary Science Reviews, 1-10, doi:10.1016/j.quascirev.2011.07.022.

Lorenzen ED, Nogués-Bravo, Orlando L, Weinstock J, Binladen J, Marske KA, Ugan A, Borregaard MK, Gilbert MTP, Nielsen R, Ho SYW, Goebel T, Graf KE, Byers D, Stenderup JT, Rasmussen M, Campos PF, Leonard JA, Koepfli K-P, Froese D, Zazula G, Stafford Jr. TW, Aaris-Sørensen K, Batra P, Haywood AM, Singarayer JS, Valdes PJ, Boeskorov G, Burns JA, Davydov SP, Haile J, Jenkins DL, Kosintsev P, Kuznetsova T, Lai X, Martin LD, McDonald HG, Mol D, Meldgaard M, Munch K, Stephan E, Sablin M, Sommer RS, Sipko T, Scott E, Suchard MA, Tikhonov A, Willerslev R, Wayne RK, Cooper A, Hofreiter M, Sher A, Shapiro B, Rahbeck C, Willerslev E (2011): Individualistic species responses to climate and humans determinate Late Quaternary megafaunal extinction and survival. Nature 479:359-364

Malmström H, Vretemark M, Tillmar A, Brandström Durling M, Skoglund P, Gilbert MTP, Willerslev E, Holmlund G, Götherström A (2011): Finding the founder of Stockholm - a kinship study based on Y-chromosomal, autosomal and mitochondrial DNA. Annals of anatomy = Anatomischer Anzeiger : official organ of the Anatomische Gesellschaft.

Olsen ME, Bengtsson CF, Bertelsen MF, Willerslev E, Gilbert MTP (2011): DNA from keratinous tissue, part II: Feather. Annals of anatomy = Anatomischer Anzeiger : official organ of the Anatomische Gesellschaft.

Orlando L, Ginholac A, Raghavan M, Vilstrup J, Rasmussen M, Magnussen K, Steinmann KE, Kapranov P, Thompson JF, Zazula G, Froese D, Moltke I, Shapiro B, Hofreiter M, Al-Rasheid KAS, Gilbert MTP, Willerslev E (2011): True single-molecule DNA sequencing of a Pleistocene horse bone. Genome Res 21: 1705-1719

Orton DC, Makowiecki D, de Roo T, Johnstone C, Harland J, Jonsson L, Heinrich D , Enghoff I.B , Lougas L, Van Neer W, Ervynck A, Hufthammer AK, Amundsen C, Jones AK, Locker A, Hamilton-Dyer S, Pope P, MacKenzie B, Richards M, O'Connell T. C & Barrett JH (2011): Stable isotope evidence for late medieval (14th-15th C) origing of the eastern Baltic cod (Gadus morhua) fishery. PloS One , vol 6, nr. 11, s. 1-15.

Pantmann, P, & Enghoff I. B, (2011): På dybt vand. Skalk 2011:1, s 12-15

Rasmussen M, Guo X, Wang Y, Lohmueller KE, Rasmussen S, Albrechtsen A, Skotte L, Lindgreen S, Metspalu M, Jombart T, Kivisild T, Zhai W, Eriksson A, Manica A, Orlando L, De La Vega F, Tridico S, Metspalu E, Nielsen K, Ávila-Arcos MC, Moreno-Mayar JV, Muller C, Dortch J, Gilbert MTP, Lund O, Wesolowska A, Karmin M, Weiner LA, Wang B, Li J, Tai S, Xiao F, Hanihara T, van Driem G, Jha AR, Ricaut F-X, de Knijff P, Migliano AB, Gallego-Romero I, Kristiansen K, Lambert DM, Brunak S, Forster P, Brinkmann B, Nehlich O, Bunce M, Richards M, Gupta R, Bustamante C, Krogh A, Foley RA, Lahr MM, Balloux F, Sicheritz-Pontén T, Villems R, Nielsen R, Jun W, Willerslev E (2011): An Aboriginal Australian genome reveals separate human dispersals into Asia. Science 334:94-98

Rehn N, Filatova OA, Durban JW, Foote AD (2011): Cross-cultural and cross-ecotype production of a killer whale ‘excitement' call suggests universality. Naturwissenschaften 98:1-6

Tange O (2011): GNU Parallel - The Command-Line Power Tool. ;login: The USENIX Magazine, February 2011:42-47

Tange O (2011): GNU SQL - A Command Line Tool for Accessing Different Databases Using DBURLs. ;login: The USENIX Magazine, April 2011:29-32

Thomsen PF, Kielgast J, Iversen LL, Wiuf C, Rasmussen M, Gilbert MTP, Orlando L, Willerslev E (2011): Monitoring Endangered Freshwater Biodiversity using Environmental DNA. Molecular Ecology. DOI:10.1111/j.1365-294X.2011.05418.x

Ukkonen, P., Aaris-Sørensen, K., Arppe, L., Clark, P. U., Daugnora, L., Lister, A. M., Lõugas, L., Seppä, H., Sommer, R. S., Stuart, A. J., Wojtal, P. & Zupins, I. (2011): Woolly mammoth (Mammuthus primigenius Blum.) and its environment in northern Europe during the last glaciation. Quaternary Science Reviews 30: 693-712

Van Doorn N, Wilson A, Willerslev E, Gilbert MTP (2011): Bone marrow and bone as a source for post-mortem RNA. J Forensic Science 56:720-725

Vilstrup JT, Ho Simon YW, Foote AD, Morin PA, Kreb D, Krützen M, Parra GJ, Robertson KM, de Stephanis R, Verborgh P, Willerslev E, Orlando L, Gilbert MTP (2011): Mitogenomic phylogenetic analyses of the Delphinidae with an emphasis on the Globicephalinae. BMC Evol Biology 11:65

Waters MR, Stafford Jr. TW, McDonald GH, Gustafson C, Rasmussen M, Cappellini E, Olsen JV, Szklarczyk D, Juhl Jensen L, Gilbert MTP, Willerslev E (2011): Pre-Clovis mastodon hunting 13,800 years ago at the Manis site, Washington: Implications for explaining the extinction of megafauna at the end of the Pleistocene. Science 334:351-353

White NE, Phillips MJ, Gilbert MTP, Alfaro A, Willerslev E, Mawson PR, Spencer PBS, Bunce M (2011): The evolutionary history of Cockatoos (Psittaciformes: Cacatuidae). Mol Phyl Evol 59:615-622

Wiig Ø, Heide-Jørgensen MP, Laidre KL, Garde E, Reeves RR (2011): Geographic variation in cranial morphology of narwhals (Monodon monoceros) from Greenland and the eastern Canadian Arctic. Polar Biology 35:63-71

(Last updated 26.01.2012)