Publications – University of Copenhagen

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GeoGenetics > Publications


(Updated 11.10.2016)

Publications 2016

Publications 2015

Publications 2014

Publications 2013

Publications 2012

Publications 2011

Publications 2010

Publications 2009

Publications 2016

Alfaro-Núñez A, Bojesen AM, Bertelsen MF, Wales N, Balazs GH, and Gilbert MTP. Further evidence of Chelonid herpesvirus 5 (ChHV5) latency: high levels of ChHV5 DNA detected in clinically healthy marine turtles. PeerJ 4:e2274, 2016.

Bangsgaard P, Yeomans L. Zooarchaeological perspectives on rural economy and landscape use in the 18th century Qatar. In: S McPhillips and P. Woodsworth (eds.), The Materiality of the Rural Islamic World: archaeological and historical approaches. Philadelphia: University of Pennsylvania Press, chapter 5. 2016.

Bangsgaard P. Fauna through the Ages, a view from the Aitolian Heartland. In: S. Dietz and L. Kolonas (eds.):Chalkis Aitolias III, The Emporion. Fortification systems at Aghia Triada and the Late Classical and Hellenistic habitation in area III. The fortifications at Pangali, Monographs of the Danish Institute at Athens, vol. 7.3, Århus: Århus University Press, pp. 239-252. 2016.

Bayerova Z, Janova E, Matiasovic J, Orlando L, Horin P. (2016). Positive selection in the SLC11A1 gene in the family Equidae. Immunogenetics 68:353-64.

Crawford JE, Riehle MM, Markianos K, Bischoff E, Guelbeogo WM, Gneme A, Sagnon N'F, Vernick KD, Nielsen R, Lazzaro BP. Evolution of GOUNDRY, a cryptic subgroup of Anopheles gambiae sl, and its impact on susceptibility to Plasmodium infection. Molecular ecology, 2016. doi: 10.1111/mec.13572. (OA)

Demarchi B, Hall S, Roncal-Herrero T, Freeman CL, Woolley J, Crisp MK, Wilson J, Fotakis A, Fischer R, Kessler BM, Jersie-Christensen RR, Olsen JV, Haile J, Thomas J, Marean CW, Parkington J, Presslee S, Lee-Thorp J, Ditchfield P, Hamilton JF, Ward MW, Wang CM, Shaw MD, Harrison T, Domínguez-Rodrigo M, MacPhee RDE, Kwekason A, Ecker M,
Horwitz LK, Chazan M, Kröger R, Thomas-Oates J, Harding JH, Cappellini E, Penkman K,
& Collins MJ. Protein sequences bound to mineral surfaces persist into deep time. eLife 2016;5:e17092 (published 27. September 2016).

Fernandez R, Schubert M, Vargas AM, Brownlow A, Vikingsson GA, Siebert U, Jensen LF, Øien N, Wall D, Rogan E, Mikkelsen B, Dabin W, Alfarhan AH, Alquraishi SA, Al-Rasheid KAS, Guillot G, Orlando L. 2016. A genome-wide catalogue of single nucleotide polymorphisms in white-beaked and atlantic white-sided dolphins. Mol Ecol Resour, Volume 16, Issue 1, pages 266–276, January 2016. Article first published online 29 May 2015, DOI: 10.1111/1755-0998.12427.

Friis-Nielsen J, Kjartansdóttir KR, Mollerup S, Asplund M, Mourier T, Jensen RH, Hansen TA, Rey-Iglesia A, Richter SR, Nielsen IB, Alquezar-Planas DE, Olsen PV, Vinner L, Fridholm H, Nielsen LP, Willerslev E, Sicheritz-Pontén T, Lund O, Hansen AJ, Izarzugaza JM, Brunak S. Identification of Known and Novel Recurrent Viral Sequences in Data from Multiple Patients and Multiple Cancers. Viruses. 2016 Feb 19;8(2). pii: E53. doi: 10.3390/v8020053.

Gamba C, Hanghøj K, Gaunitz C, Alfarhan A, Alquraishi S, Al-Rashed K, Bradley D, Orlando L. 2015. Comparing the performance of three ancient DNA extraction methods for high-throughput sequencing. Molecular Ecology Resources, Volume 16,  Issue 2, pages 459–469, March 2016. Article first published online: 15 Oct 2015, DOI: 10.1111/1755-0998.12470

Grealy A, Macken A, Allentoft ME, Rawlence NJ, Reed E, Bunce M. An assessment of ancient DNA preservation in Holocene–Pleistocene fossil bone excavated from the world heritage Naracoorte Caves, South Australia. Journal of Quaternary Science, 2016. DOI: 10.1002/jqs.2830. (OA)

Hansen TA, Joshi T, Larsen AR, Andersen PS, Harms K, Mollerup S, Willerslev E, Fuursted K, Nielsen LP, Hansen AJ. Vancomycin gene selection in the microbiome of urban Rattus norvegicus from hospital environment. Evolution, Medicine and Public Health, 12. July 2016. doi:10.1093/emph/eow021

Hansen TA, Mollerup S, Nguyen N-p, White NE, Coghlan M, Alquezar-Planas DE, Joshi T, Jensen RH, Fridholm H, Kjartansdóttir KR,  Mourier T, Warnow T, Belsham GJ, Bunce M, Willerslev E, Nielsen LP, Vinner L and Hansen AJ. High diversity of picornaviruses in rats from different continents revealed by deep sequencing. Emerging Microbes & Infections (2016) 5, e90; doi:10.1038/emi.2016.90. Published online 17 August 2016.

Houmark-Nielsen M, Bennike O, Lemdahl G & Luthgens C. Evidence of ameliorated Middle Weichselian climate and sub-arctic environment in the western Baltic region: coring lake sediments at Klintholm, Møn, Denmark. Boreas, Vol. 45, pp. 347-359. 10.1111/bor.12159.

Huber CD, DeGiorgio M, Hellmann I, Nielsen R. Detecting recent selective sweeps while controlling for mutation rate and background selection. Molecular ecology 25 (1), 142-156, 2016. (OA)

Imsland F, McGowan K, Rubin CJ, Henegar C, Sundström E, Berglund J, Schwochow D, Gustafson U, Imsland P, Lindblad-Toh K, Lindgren G, Mikko S, Millon L, Wade C, Schubert M, Orlando L, Penedo MC, Barsh GS, Andersson L. (2016). Regulatory mutations in TBX3 disrupt asymmetric hair pigmentation that underlies Dun camouflage color in horses. Nat Genet. 48:152-8.

Korsgaard, NJ, Nuth C, Khan SA, Kjeldsen KK, Bjørk AA, Schomacker A & Kjær KH. Digital elevation model and orthophotographs of Greenland based on aerial photographs from 1978–1987. 10 May 2016 In : Scientific Data. 3, 160032, 160032

Larsen NK, Find J, Kristensen A, Bjørk AA, Kjeldsen KK, Odgaard BV, Olsen J, Kjær KH. Holocene ice marginal fluctuations of the Qassimiut lobe in South Greenland. Nature Scientific Reports Vol 6, 22362, p. 1-11, 2016. (OA)

Leonardi M, Librado P, Der Sarkissian C, Schubert M, Alfarhan AH, Alquraishi SA, Al-Rasheid KAS, Gamba C, Willerslev E and Orlando L.  Evolutionary Patterns and Processes: Lessons from Ancient DNA. Syst Biol, (2016). doi:10.1093/sysbio/syw059. First published online July 5, 2016.

Machguth H, Thomsen HH, Weidick A, Abermann J, Ahlstrøm AP, Andersen ML, Andersen SB, van As D, Bjørk AA, Box A, Braithwaite RJ, Bøggild CE, Citterio M, Clement P, Colgan W, Fausto RS, Gleie K, Hasholt B, Hynek B, Knudsen NT, Larsen SH, Mernild SH, Oerter H, Olesen OB, Steffen K, Stober M, Sugiyama S & van de Wal RS. Database of Greenland surface mass balance observations from the ice sheet ablation area and the local glaciers. Journal of Glaciology (in press).

Malaspinas A-S, Westaway MC, Muller C, Sousa VC, Lao O, Alves I, Bergström A, Athanasiadis G, Cheng JY, Crawford JE, Heupink TH, Macholdt E, Peisch S, Rasmussen S, Schiffels S, Subramanian S, Wright JL, Albrechtsen A, Barbieri C, Dupanloup I, Eriksson A, Margaryan A, Moltke I, Pugach I, Korneliussen TS, Levkivskyi IP, Moreno-Mayar JV, Ni S, Racimo F, Sikora M, Xue Y, Aghakhanian FA, Brucato N, Brunak S, Campos PF, Clark W, Ellingvåg S, Fourmile G, Gerbault P, Injie D, Koki G, Leavesley M, Logan B, Lynch A, Matisoo-Smith EA, McAllister PJ, Mentzer AJ, Metspalu M, Migliano AB, Murgha L, Phipps ME, Pomat W, Reynolds D, Ricaut F-X, Siba P, Thomas MG, Wales T, Wall CM,  Oppenheimer SJ, Tyler-Smith C, Durbin R, Dortch J, Manica A, Schierup MH, Foley RA, Lahr MM, Bowern C, Wall JD, Mailund T, Stoneking M,  Nielsen R, Sandhu MS, Excoffier L, Lambert DM, & Willerslev E. A genomic history of Aboriginal Australia. Nature, 22. September 2016.

Mollerup S, Friis-Nielsen J, Vinner L, Hansen TA, Richter SR, Fridholm H, Herrera JA, Lund O, Brunak S, Izarzugaza JM, Mourier T, Nielsen LP, Hansen AJ. Propionibacterium acnes: Disease-Causing Agent or Common Contaminant? Detection in Diverse Patient Samples by Next-Generation Sequencing. J Clin Microbiol. 2016 Apr;54(4):980-7. doi: 10.1128/JCM.02723-15. Epub 2016 Jan 27.

Muresan IS, Khan SA, Aschwanden A, Khroulev C, van Dam T, Bamber J, van den Broeke M, Wouters B, Munneke PK, Kjær KH. Modelled glacier dynamics over the last quarter of a century at Jakobshavn Isbræ. The Cryosphere vol. 10, p. 597-611 2016. (PR)

Pedersen MW, Ruter A, Schweger C, Friebe H, Staff RA, Kjeldsen KK, Mendoza MLZ, Beaudoin AB, Zutter C, Larsen NK, Potter BA, Nielsen R, Rainville RA, Orlando L, Meltzer DJ, Kjær KH, Willerslev E. Postglacial viability and colonization in North America’s ice-free corridor. Nature (2016), doi:10.1038/nature19085. Published online  10 August 2016.

Schubert M, Lindgreen S, Orlando L. (2016). AdapterRemoval v2: rapid adapter trimming, identification, and read merging. BMC Res Notes. 9:88.

Thomsen PF, Jørgensen PS, Bruun HHK, Pedersen J, Riis-Nielsen T, Jonko K, Słowińska I, Rahbek C, Karsholt O. Resource specialists lead local insect community turnover associated with temperature – analysis of an 18-year full-seasonal record of moths and beetles. Journal of Animal Ecology 85, 251-261. 2016.

Valentini A, Taberlet P, Miaud C, Civade R, Herder J, Thomsen PF, Bellemain E, Besnard A, Coissac E, Boyer F, Gaboriaud C, Jean P, Poulet N, Roset N, Copp GH, Geniez P, Pont D, Argillier C, Baudoin J-M, Peroux T, Crivelli AJ, Olivier A, Acqueberge M, Le Brun M, Møller PR, Willerslev E, Dejean T. Next-generation monitoring of aquatic biodiversity using environmental DNA metabarcoding. Molecular Ecology, Vol. 25, No. 4, 2016, p. 929-942.

Wales N, Madrigal JR, Cappellini E, Baez AC, Castruita JAS, Romero-Navarro JA, Carøe C, Ávila-Arcos MC et al. The limits and potential of paleogenomic techniques for reconstructing grapevine domestication. Journal of Archaeological Science 72:57-70, 2016.

Publications 2015

Ai H, Fang X, Yang B, Huang Z, Chen H, Mao L, Zhang F, Zhang L, Cui L, He W, Yang J, Yao X, Zhou L, Han L, Li J, Sun S, Xie X, Lai B, Su Y, Lu Y, Yang H, Huang T, Deng W, Nielsen R, Ren J, Huang L. Adaptation and possible ancient interspecies introgression in pigs identified by whole-genome sequencing. Nature genetics 47 (3), 217-225, 2015.

Alberdi A, Gilbert MTP, Razgour O, Aizpurua O, Aihartza J, Garin I. Contrasting population-level responses to Pleistocene climatic oscillations in an alpine bat revealed by complete mitochondrial genomes and evolutionary history inference. J Biogeography 9:1689-1700, 2015.

Allentoft MA, Sikora M, Sjogren KG, Rasmussen S, Rasmussen M, Stenderup J, Damgaard PB, Schroeder H, Ahlstrom T, Vinner L,  Malaspinas A-S, Margaryan A, Higham T, Chivall D, Lynnerup N,  Harvig L, Baron J, Della Casa P, Dabrowski P, Duffy PR, Ebel AV, Epimakhov A, Frei K, Furmanek M, Gralak T, Gromov A, Gronkiewicz S, Grupe G, Hajdu T, Jarysz R, Khartanovich V, Khokhlov A, Kiss V,  Kolar J, Kriiska A, Lasak I, Longhi K, McGlynn G, Merkevicius A, Merkyte I, Metspalu M, Mkrtchyan M, Moiseyev V, Paja L, Palfi G,  Pokutta D, Pospieszny L, Price TD, Saag L, Sablin M, Shishlina N, Smrcka V, Soenov VI, Szeverenyi V, Toth G, Trifanova SV, Varul L, Vicze M, Yepiskoposyan L, Zhitenev V, Orlando L, Sicheritz-Ponten T, Brunak S, Nielsen R, Kristiansen K & Willerslev E. (2015) Population genomics of Bronze Age Eurasia. Nature, Volume:522, Pages:167–172. 11 June 2015. DOI:doi:10.1038/nature14507. PR

Allentoft et al. Ancient DNA microsatellite analyses of the extinct New Zealand giant moa (Dinornis robustus) identify relatives within a single fossil site. Heredity, Vol. 115, 481-487, 2015. PR

Alsos IG, Sjögren P, Edwards ME, Landvik JY, Gielly L, Forwick M, Coissac E, Brown AG, Jakobsen LV, Føreid MK, Pedersen MW. Sedimentary ancient DNA from Lake Skartjørna, Svalbard: Assessing the resilience of arctic flora to Holocene climate change. The Holocene. November 11, 2015, doi: 10.1177/0959683615612563

Andrews J, Bjørk AA, Eberl D, Jennings A, Verplanck E. Significant differences in late Quaternary bedrock erosion and transport: East versus West Greenland 70°N – evidence from the mineralogy of offshore glacial marine sediments. I: Journal of Quaternary Science, Vol. 30/5, 05.2015, s. 452-463.

Avila-Arcos MC, Lalueza-Fox C, Gilbert MTP. Neanderthal DNA Sequenced. In: Trefil J (ed) Discoveries in Modern Science: Exploration, Invention, Technology. Farmington Hills: Macmillan pp. 732-735. 2015.

Ávila-Arcos MC, Sandoval-Velasco M, Schroeder H, Carpenter ML, Malaspinas A-S, Wales N, Peñaloza F, Bustamante CD, & Gilbert MTP. Comparative Performance of Two Whole Genome Capture Methodologies on Ancient DNA Illumina Libraries. Methods in Ecology and Evolution, 6, 725-734. 2015. PR

Bangsgaard P. Animal Bones. In: J. Strange (ed.): Tall-el-Fukhar, Result from the Excavations in 1990-93 and 2002, vol. I  Text. Proceedings of the Danish Institute in Damascus vol. 9, pp. 378-397, 2015.

Bangsgaard P. An Additional Note to Kent V. Flannery’s Chapter on Animal Domestication at Tepe Guran. In: P. Mortensen, Excavations at Tepe Guran, The Neolithic Period, Acta Iranica 55. Peeters Publishers, pp. 107-114, 2015. PR

Benediktsson ÍÖ, Schomacker A, Johnson MD, Geiger AJ, Ingólfsson Ó & Guðmundsdóttir ER. Architecture and structural evolution of an early Little Ice Age terminal moraine at Múlajökull, surge-type glacier, Iceland. Journal of Geophysical Research, 120, 16 pp, 2015. doi:10.1002/2015JF003514. PR, CO

Bjørk AA, Kruse LM & Michaelsen PB. Getting Greenland’s glaciers right – a new dataset of all official Greenlandic glacier names. The Cryosphere vol. 9, p. 2215-2218, 2015.

Bleicher N, Kelstrup C, Olsen JV, Cappellini E. Molecular evidence of use of hide glue in 4th millennium BC Europe. J. of Archaeological Science, 2015. DOI:10.1016/j.jas.2015.08.012.

Borges R, Khan I, Johnson WE, Gilbert MTP, Zhang G, Jarvis ED, O’Brien SJ, Antunes A.  Gene loss, adaptive evolution, and the co-evolution of plumage coloration genes with opsins in birds. BMC Genomics 16:751, 2015. (OA)

Bruhn CAW, Nielsen SCA, Samaniego JA, Wadsworth J, Knowles N, Gilbert MTP. Viral meningitis epidemics and a single, recent, recombinant and anthroponotic origin of Swine Vesicular Disease Virus. Evolution, Medicine and Public Health 1:289-303. 2015. (OA)

Brynjólfsson S, Schomacker A, Guðmundsdóttir ER & Ingólfsson Ó. A 300-year surge history of the Drangajökull ice cap, northwest Iceland, and its maximum during the ‘Little Ice Age’. The Holocene, 25 (7), 1076-1092, 2015. PR, CO

Brynjólfsson S, Schomacker A, Ingólfsson Ó & Keiding JK. Cosmogenic 36Cl exposure ages reveal a 9.3 ka BP glacier advance and the Late Weichselian-Early Holocene glacial history of the Drangajökull region, northwest Iceland. Quaternary Science Reviews, 126, 140-157, 2015. PR, CO

Cao H, Wu H, Luo R, Huang S, Sun Y, Tong X, Xie Y, Liu B, Yang H, Zheng H, Li J, Li B, Wang Y, Yang F, Sun P, Liu S, Gao P, Huang H, Sun J, Chen D, He G, Huang W, Huang Z, Li Y, Tellier LCAM, Liu X, Feng Q, Xu X, Zhang X, Bolund L, Krogh A, Kristiansen K, Drmanac R, Drmanac S, Nielsen R, Li S, Wang J, Yang H, Li Y, Wong GK-S, Wang J. De novo assembly of a haplotype-resolved human genome. Nature biotechnology 33 (6), 617-622. 2015.

Cracraft J, Houde P, Ho SYW, Mindell DP, Fjeldså J, Lindow B, Edwards SV, Rahbek C, Mirarab S, Warnow T, Gilbert MTP, Zhang G, Braun EL, Jarvis ED. Response to Comment on "Whole-genome Analyses Resolve Early Branches in the Tree of Life of Modern Birds". Science 349:1460, 2015.

Crawford JE, Riehle MM, Wamdaogo M Guelbeogo, Awa Gneme, N'Fale Sagnon, Kenneth D Vernick, Rasmus Nielsen, Brian P Lazzaro. Reticulate Speciation and Barriers to Introgression in the Anopheles gambiae Species Complex. Genome biology and evolution 7 (11), 3116-3131, 2015.

Damgaard PB, Margaryan A, Schroeder H, Orlando L, Willerslev E, Allentoft ME. Improving access to endogenous DNA in ancient bones and teeth. Scientific Reports 5, Article no. 11184, doi:10.1038/srep11184. 17. June 2015. PR

DeGiorgio M, Huber CD, Hubisz MJ, Hellmann I, Nielsen R. User Manual for SweepFinder2. 2015.

DeGiorgio M, Huber CD, Hubisz MJ, Hellmann I, Nielsen R. SWEEPFINDER2: Increased sensitivity, robustness, and flexibility arXiv. arXiv:1505.07142. 2015.

Enghoff IB & Ediger V. Snapshots of past fish faunas: paleooceanographic perspectives from the Baltic and Black Seas. Environmental Archaeology, 2015.

Eöry L, Gilbert MTP, Li C, Li B, Archibald A, Aken BL, Zhang G, Jarvis ED, Flicek P, Burt DW. Avianbase: a community resource for bird genomics. Genome Biology 16:21, 2015.

da Fonseca RR, Smith BD, Wales N, Cappellini E, Skoglund P, Fumagalli M, Samaniego AJ, Carøe C, Ávila-Arcos MC, Hufnagel DE, Korneliussen TS, Vieira FG, Jakobsson M, Arriaza B, Willerslev E, Nielsen R, Hufford MB, Albrechtsen A, Ross-Ibarra J, Gilbert MTP. The origin and evolution of maize in the Southwestern United States. Nature Plants, (2015). DOI:10.1038/nplants.2014.3. PR, CO

da Fonseca RR, Smith BD, Wales N, Cappellini E, Skoglund P, Fumagalli M, Samaniego AJ, Carøe C, Ávila-Arcos MC, Hufnagel DE, Korneliussen TS, Vieira FG, Jakobsson M, Arriaza B, Willerslev E, Nielsen R, Hufford MB, Albrechtsen A, Ross-Ibarra J, Gilbert MTP. Erratum: The origin and evolution of maize in the Southwestern United States. Nature Plants, 15007, 2015.

Foote AD, Liu Y, Thomas GWC, Vinař T, Alföldi J, Deng J, Dugan S, van Elk CE, Joshi V, Khan Z, Kovar C, Lee SL, Lindblad-Toh K, Mancia A, Nielsen R, Qin X, Qu J Raney BJ, Vijay N, Wolf JBW, Hahn MW, Muzny DM, Worley KC, Gilbert MTP, Gibbs RA. Convergent evolution of the genomes of marine mammals. Nature Genetics 47:272–275, 2015.

Frei et al. Tracing the life story of a Bronze Age Female. Scientific Reports, 5:10431, DOI: 10.1038/srep10431. 2015. PR

Fumagalli M, Moltke I, Grarup N, Racimo F, Bjerregaard P, Jørgensen ME, Korneliussen TS, Gerbault P, Skotte L, Linneberg A, Christensen C, Brandslund I, Jørgensen T, Huerta-Sánchez E, Schmidt EB, Pedersen O, Hansen T, Albrechtsen A, Nielsen R. Greenlandic Inuit show genetic signatures of diet and climate adaptation. Science 349 (6254), 1343-1347, 2015.

Gamba C, Hanghøj K, Gaunitz C, Alfarhan AH, Alquraishi SA, Rasheid KAS Al-, Bradley D, Orlando L. 2015. Comparing the performance of three ancient DNA extraction methods for high-throughput sequencing. Mol. Ecol. Resour. [Epub ahead of print]. Available from:

Gamba C*, Seguin-Orlando A*, Sarkissian CD, Ermini L, Louvel G, Boulygina E, Sokolov A, Nedoluzhko A, Lorenzen ED, Lopez P, Gregory McDonald H, Scott E, Tikhonov A, Stafford TW Jr, Alfarhan AH, Alquraishi SA, Al-Rasheid KAS, Shapiro B, Willerslev E, Prokhortchouk E, Orlando L. Pros and cons of methylation-based enrichment methods for ancient DNA. Scientific Reports 5:11826. 2015.

Genome10K Consortium of Scientists. The Genome 10K Project – A way forward. Annual Review of Animal Biosciences 3:57-111, 2015.

Grayson DK and Meltzer DJ. Revisiting Paleoindian exploitation of extinct North American mammals. Journal of Archaeological Science 56:177-193., 2015. DOI: 10.1016/j.jas.2015.02.009. PR

Gusfield D, Nielsen R. Association Mapping for Compound Heterozygous Traits Using Phenotypic Distance and Integer Programming. Algorithms in Bioinformatics, 136-147, 2015.

Hansen TA, Fridholm H, Frøslev TG, Kjartansdóttir KR, Willerslev E, Nielsen LP, et al. (2015). New Type of Papillomavirus and Novel Circular Single Stranded DNA Virus Discovered in Urban Rattus norvegicus Using Circular DNA Enrichment and Metagenomics. PLoS ONE 10(11): e0141952. doi:10.1371/journal.pone.0141952

Harris K, Nielsen R. The genetic cost of Neanderthal introgression. bioRxiv, 030387. 2015.

Hestand MS, Kalbfleisch TS, Coleman SJ, Zeng Z, Liu J, Orlando L, MacLeod JN. 2015. Annotation of the Protein Coding Regions of the Equine Genome. PLoS One

Jayalath K, RF Gunst & Meltzer DJ. Spatial point process identification of an apparent Ice Age house structure. Spatial Statistics 14:563-580. 2015. DOI: 10.1016/j.spasta.2015.09.003. PR

Jeffares DC, Rallis C, Rieux A, Speed D, Převorovský M, Mourier T, Marsellach FX, Iqbal Z, Lau W, Cheng TM, Pracana R, Mülleder M, Lawson JL, Chessel A, Bala S, Hellenthal G, O'Fallon B, Keane T, Simpson JT, Bischof L, Tomiczek B, Bitton DA, Sideri T, Codlin S, Hellberg JE, van Trigt L, Jeffery L, Li JJ, Atkinson S, Thodberg M, Febrer M, McLay K, Drou N, Brown W, Hayles J, Salas RE, Ralser M, Maniatis N, Balding DJ, Balloux F, Durbin R, Bähler J. The genomic and phenotypic diversity of Schizosaccharomyces pombe. Nat Genet. 2015 Feb 9. doi: 10.1038/ng.3215. [Epub ahead of print]

Jensen JF, Appelt M, Myrup M, Haack H, Taube M. Himmelsk og jordisk jern i Grønlands forhistorie. Nationalmuseets Arbejdsmark 2015. pp 116-131. 2015. PR

Jensen JF. Qajaa Excavations 1981 and 1982 - a West Greenland Saqqaq site with preserved wood and bone. Sila Arktisk Center ved Etnografisk Samling Nationalmuseet, feltrapport 36, 88 p., 2015

Jensen RH, Mollerup S, Mourier T, HansenTA, Fridholm H, Nielsen LP et al. (2015). Target-Dependent Enrichment of Virions Determines the Reduction of High-Throughput Sequencing in Virus Discovery. PLoS ONE, 10(4). OA

Karmin M, Saag L, Vicente M et al. A recent bottleneck of Y chromosome diversity coincides with a global change in culture. Genome research 25 (4), 459-466, 2015. OA

Khan I, Yang Z, Maldonado E, Li C, Zhang G, Gilbert MTP, Jarvis ED, O’Brien SJ, Johnson WE, Antunes A. Olfactory receptor subgenomes linked with broad ecological adaptations in Sauropsida. Molecular Biology and Evolution 32:2 832-2843, 2015. OA

Khan SA, Aschwanden A, Bjørk AA, Wahr J, Kjeldsen KK, Kjær KH. Greenland ice sheet mass balance: a review. I: Reports on Progress in Physics, Vol. 78, 2015.

Kjartansdóttir KR, Friis-Nielsen J, Asplund M, Mollerup S, Mourier T, Jensen RH et al. (2015). Traces of ATCV-1 associated with laboratory component contamination. Proceedings of the National Academy of Sciences, 201423756.

Kjeldsen KK, Korsgaard NJ, Bjørk AA, Khan SA, Box JE, Funder S, Larsen NK, Bamber JL, Colgan W, van den Broeke M, Siggaard-Andersen ML, Nuth C, Schomacker A, Andresen CS, Willerslev E & Kjær KH. Spatial and temporal distribution of mass loss from the Greenland Ice Sheet since AD 1900. Nature, 528, 396-400. doi:10.1038/nature16183. 2015. PR, CO

Korneliussen TS, Moltke I. NgsRelate: a software tool for estimating pairwise relatedness from next-generation sequencing data. Bioinformatics. 2015 Dec 15;31(24):4009-11. doi:10.1093/bioinformatics/btv509. Epub 2015 Aug 30. PR, OA

Korsgaard NJ, Schomacker A, Benediktsson ÍÖ, Larsen NK, Ingólfsson Ó & Kjær KH. Spatial distribution of erosion and deposition during a glacier surge: Brúarjökull, Iceland. Geomorphology, 250, 258-270, 2015. PR, CO

Larsen NK, Kjær KH, Lecavalier B, Bjørk AA, Colding S, Huybrechts P, Jakobsen K, Kjeldsen KK, Knudsen KL, Odgaard B, Olsen J. The response of the southern Greenland ice sheet to the Holocene thermal maximum. I: GEOLOGY, Vol. 43, Nr. 4, 2015, s. 291-294.

Librado P*, Sarkissian DC*, Ermini L, Schubert M, Jónsson H, Albrechtsen A, Fummagalli M, Yang MA, Gamba C, Ginolhac A, Seguin-Orlando A, Mortensen CD, Petersen B, Hoover C, Lorente B, Nedoluzhko A, Boulougina E, Neuditschko M, Jagannathan V, Thèves C, Alfarhan AH, Alquraishi SA, Al-Rasheid KAS, Sicheritz-Ponten T, Popov R, Alekseev AN, Rubin E, McCue M, Rieder S, Leeb T, Tikhonov A, Crubézy E, Slatkin M, Marques-Bonet T, Nielsen R, Willerslev E,  Kantanen J, Prokhortchouk E, Orlando L. Tracking the origins of Yakutian horses and the genetic basis for their fast adaptation to subarctic environments. Proceedings of the National Academy of Sciences. Doi:10.1073/pnas.1513696112.

Malmström H, Linderholm A, Skoglund P, Storå J, Sjödin P, Gilbert MTP, Holmlund G, Willerslev E, Jakobsson M, Lidén K, Götherström A (2015). Ancient mitochondrial DNA from the northern fringe of the Neolithic farming expansion in Europe sheds light on the dispersion process. Phil. Trans. B. 370.

Martin M D, Vieira F G, Ho S Y W, Wales N, Schubert M, Seguin-Orlando A, Ristaino J B, & Gilbert M T P. Genomic Characterization of a South American Phytophthora Hybrid Mandates Reassessment of the Geographic Origins of Phytophthora infestans. Molecular Biology and Evolution. 33:478-491, 2015. OA, PR, CO

Meltzer DJ. Kennewick Man: coming to closure. Antiquity 89:1485-1493. 2015. DOI: 10.15184/aqy.2015.160. PR

Meltzer DJ. Pleistocene overkill and North American mammalian extinctions. Annual Review of Anthropology 44:33-53. 2015. DOI: 10.1146/annurev-anthro-102214-013854. PR

Mendoza LMZ, Sicheritz-Ponten T, Gilbert MTP. Environmental genes and genomes: Understanding the differences and challenges in the approaches and software for their analyses. Briefings in Bioinformatics doi: 10.1093/bib/bbv001. 2015. (OA)

Moltke I, Fumagalli M, Korneliussen TS, Crawford JE, Bjerregaard P, Jørgensen ME, Grarup N, Gulløv HC, Linneberg A, Pedersen O, Hansen T, Nielsen R, Albrechtsen A. Uncovering the genetic history of the present-day Greenlandic population. The American Journal of Human Genetics 96 (1), 54-69, 2015.

Moon S, Kim T-H, Lee K-T, Kwak W, Lee T, Lee S-W, Kim M-J, Cho K, Kim N, Chung W-H, Sung S, Park T, Cho S, Groenen MAM, Nielsen R, Kim Y, Kim H. A genome-wide scan for signatures of directional selection in domesticated pigs. BMC genomics 16 (1), 2015.

Morin PA, Parsons KM, Archer FI, Ávila-Arcos MC, Barrett-Lennard LG, Dalla Rosa L, Duchêne S, Durban JW, Ellis G, Ferguson SH, Ford JK, Ford M, Garilao C, Gilbert MTP, Kaschner K, Matkin CO, Petersen SD, Robertson KM, Visser IN, Wade PR, Ho SYW, Foote AD. Geographical and temporal dynamics of a global radiation and diversification in the killer whale. Molecular Ecology 24:3964-3979, 2015.

Mourier T, Mollerup S, Vinner L, Hansen TA, Kjartansdóttir KR, Frøslev TG, Boutrup TS, Nielsen LP, Willerslev E & Hansen AJ. Characterizing novel endogenous retroviruses from genetic variation inferred from short sequence reads. Scientific Reports, 5:15644, DOi: 10.1038/srep15644, 2015

Odumosu T & Schroeder H. Memorializing Contested Landscapes. Journal of African Diaspora Archaeology and Heritage. 4:3, 189-194, 2015. DOI: 10.1080/21619441.2015.1124592

Olalde I, Schroeder H, Sandoval-Velasco M, Vinner L, Lobón I, Ramírez O et al. A Common Genetic Origin for Early Farmers from Mediterranean Cardial and Central European LBK Cultures. Molecular Biology and Evolution, 32(12), msv181–11. 2015. PR

Orlando L, Gilbert MT, Willerslev E. Reconstructing ancient genomes and epigenomes. Nat Rev Genet. 2015 Jun 9. doi: 10.1038/nrg3935.

Pacioni et al. Genetic diversity loss in a biodiversity hotspot: ancient DNA quantifies genetic decline and former connectivity in a critically endangered marsupial. Molecular Ecology, vol. 24, 5813-5828. 2015. PR

Pedersen MW, Overballe-Petersen S, Ermini L, Der Sarkissian C, Haile J, Hellstrom M, Spens J, Thomsen KPF, Bohmann K, Cappellini E, Schnell IB, Wales NA, Carøe C, Campos PF, Schmidt AMZ, Gilbert MTP, Hansen AJH, Orlando L, and Willerslev E (2015). Ancient and modern environmental DNA. Phil. Trans. B. 370, Article Number 20130383. PR

Pereira RJ, Wake DB. Ring species as demonstrations of the continuum of species formation. Molecular Ecology, 28 October 2015. DOI: 10.1111/mec.13412. PR, OA

Racimo F, Gokhman D, Fumagalli M, Hansen T, Moltke I, Albrechtsen A, Carmel L, Huerta-Sanchez E, Nielsen R. Archaic adaptive introgression in TBX15/WARS2. bioRxiv, 033928, 2015.

Racimo F, Sankararaman S, Nielsen R, Huerta-Sánchez E. Evidence for archaic adaptive introgression in humans. Nature Reviews Genetics 16 (6), 359-371, 2015.

Raghavan M, Steinrücken M, Harris K, Schiffels S, Rasmussen S, DeGiorgio M, Albrechtsen A, Valdiosera C, Ávila-Arcos MC, Malaspinas A-S, Eriksson A, Moltke I, Metspalu M, Homburger JR, Wall J, Cornejo OE, Moreno-Mayar JV, Korneliussen TS, Pierre T, Rasmussen M, Campos PF, de Barros Damgaard P, Allentoft ME, Lindo J, Metspalu E, Rodríguez-Varela R, Mansilla J, Henrickson C,  Seguin-Orlando A, Malmström H, Stafford Jr. T, Shringarpure SS, Moreno-Estrada A, Karmin M,  Tambets K, Bergström A, Xue Y, Warmuth V, Friend AD, Singarayer J, Valdes P, Balloux F, Leboreiro I, Vera JL, Rangel-Villalobos H, Pettener D, Luiselli D, Davis LG, Heyer E, Zollikofer CPE, Ponce de León MS, Smith CI, Grimes V, Pike K-A, Deal M, Fuller BT, Arriaza B, Standen V, Luz MF,  Ricaut F, Guidon N, Osipova L, Voevoda MI, Posukh OL, Balanovsky O, Lavryashina M, Bogunov Y, Khusnutdinova E, Gubina M, Balanovska E, Fedorova S, Litvinov S, Malyarchuk B, Derenko M, Mosher MJ, Archer D, Cybulski J, Petzelt B, Mitchell J, Worl R, Norman PJ, Parham P, Kemp BM, Kivisild T, Tyler-Smith C, Sandhu MS, Crawford M, Villems R, Smith DG, Waters MR, Goebel T, Johnson JR, Malhi RS, Jakobsson M, Meltzer DJ, Manica A, Durbin R, Bustamante CD, Song YS, Nielsen R, Willerslev E. Genomic evidence for the Pleistocene and recent population history of Native Americans. Science 21 August 2015:aab3884 Published online 21 July 2015. PR

Rasmussen et al. Early divergent strains of Yersinia pestis in Eurasia 5,000 years ago. Cell, vol. 163, 571-582. 2015. PR

Rasmussen M, Sikora M, Albrechtsen A, Korneliussen TS, Moreno-Mayar JV, Poznik GD, Zollikofer CPE, Ponce de León M, Allentoft ME, Moltke I, Jónsson H, Valdiosera C, Malhi RS,
Orlando L, Bustamante CD, Stafford Jr. TW, Meltzer DJ, Nielsen R, and Willerslev E. The Ancestry and Affiliations of Kennewick Man. Nature, 18. June 2015. PR, CO

Rebolledo-Mendez J, Hestand MS, Coleman SJ, Zeng Z, Orlando L, MacLeod JN, KalbfleischT. 2015. Comparison of the Equine Reference Sequence with Its Sanger Source Data and New Illumina Reads. PLoS One 10:e0126852.

Reynard L, Meltzer DJ, Emslie SD and Tuross N. Stable isotopes in yellow-bellied marmot (Marmota flaviventris) fossils reveal environmental stability in the late Quaternary of the Colorado Rocky Mountains. Quaternary Research 83:345-354. 2015. DOI: 10.1016/j.yqres.2014.12.006. PR

Ribeiro AM, Zepeda-Mendoza ML, Bertelsen MF, Kristensen AT, Jarvis ED, Gilbert MTP, da Fonseca RR. A refined model of the genomic basis for phenotypic variation in vertebrate hemostasis. BMC Evolutionary Biology 15:124, 2015. OA

Rohlfs RV, Aguiar VRC, Lohmueller KE, Castro AM, Ferreira ASC, Almeida VCO, Louro ID, Nielsen R. Fitting the Balding–Nichols model to forensic databases. Forensic Science International: Genetics 19, 86-91, 2015.

Rohlfs RV, Nielsen R. Phylogenetic ANOVA: The Expression Variance and Evolution Model for Quantitative Trait Evolution. Systematic biology 64 (5), 695-708, 2015. OA

Samaniego Castruita JA, Zepeda Mendoza ML, Barnett R, Wales N & Gilbert MTP. Odintifier - A computational method for identifying insertions of organellar origin from modern and ancient high-throughput sequencing data based on haplotype phasing. BMC Bioinformatics, 16, 232. 2015. PR

Sarkissian CD, Allentoft ME, Vila-Arcos MCA, Barnett R, Campos PF, Cappellini E, Ermini L, Fernandez R, da Fonseca R, Ginolhac A, Hansen AJ, Jonsson H, Korneliussen T, Margaryan A, Martin MD, Moreno-Mayar JV, Raghavan M, Rasmussen M, Velasco MS, Schroeder H, Schubert M, Seguin-Orlando A, Wales N, Gilbert MTP, Willerslev E, Orlando L (2015). Ancient genomics. Phil. Trans. B. Article Number: UNSP 20130387. PR

Sarkissian CD, Ermini L, Schubert M, Yang MA, Librado P, Fumagalli M, Jónsson H, Bar-Gal GK, Albrechtsen A, Vieira FG, Petersen B, Ginolhac A, Seguin-Orlando A,  Magnussen K, Fages A, Gamba C, Lorente B, Polani S, Steiner C,  Neuditschko M, Jagannathan V, Feh C, Greenblatt CL, Ludwig A, Abramson N, Zimmermann W, Schafberg R, Tikhonov A, Sicheritz-Ponten T, Willerslev E, Marques-Bonet T, Ryder OA, McCue M, Rieder S, Leeb T, Slatkin M, Orlando L. Evolutionary genomics and conservation of the endangered Przewalski’s horses. Current Biology 25:2577–2583. Current Biology, Available online 24 September 2015.

Schnell IB, Sollman R, Calvignac-Spencer S, Siddall M, Yu D, Wilting A, Gilbert MTP. iDNA from terrestrial haematophagous leeches as a wildlife surveying and monitoring tool - prospects, pitfalls and avenues to be developed. Frontiers in Zoology 12:24, 2015. OA

Schnell IB, Bohmann K, Gilbert MTP. Tag jumps illuminated – reducing sequence-to-sample misidentifications in metabarcoding studies. Molecular Ecology Resources 15:1289-1303, 2015.

Schroeder H, Ávila-Arcos MC, Malaspinas AS, Poznik GD, Sandoval-Velasco M, Carpenter ML et al. (2015). Genome-wide ancestry of 17th-century enslaved Africans from the Caribbean. PNAS USA 112(12), 3669–3673. (PR)

Seersholm FV, Fischer A, Heller M, Jores J, Sachse K, Mourier T & Hansen AJ (2015). Draft Genome Sequence of the First Human Isolate of the Ruminant Pathogen Mycoplasma capricolum subsp. capricolum. Genome Announc. May/June 2015 vol. 3 no. 3 e00583-15. OA

Seguin-Orlando A, Gamba C, Der Sarkissian C, Ermini L, Louvel G, Boulygina E, Sokolov A, Nedoluzhko A, Lorenzen E, Lopez P, McDonald HG, Scott E, Tikhonov A, Stafford TW, Shapiro B, Willerslev E, Prokhortchouk E, Orlando L. 2015. Pros and cons of methylation-based enrichment methods for ancient DNA. Scientific Reports 5, Article number: 11826 doi:10.1038/srep11826

Sigsgaard EE, Carl H, Møller PR, Thomsen PF (2015). Monitoring the near-extinct European weather loach Misgurnus fossilis in Denmark by combining traditional fishing surveys and environmental DNA from water samples. Biological Conservation 183, 46-52. PR

Sinding M-HS, Arneborg J, Nyegaard G, Gilbert MTP. Ancient DNA unravels the truth behind the controversial GUS Greenlandic Norse fur samples: the bison was a horse, and the muskox and bears were goats. Journal of archaeological science, V.53, pp.297-303, (2015) 0305-4403.

Sonne C, Dyck M, Riget F, Bech-Jensen J-E, Hyldstrup L, Letcher R, Gustavson K, Gilbert T, Dietz R. Globally used chemicals and penile density in Canadian and Greenland polar bears. Environmental Research 137:287-291, 2015.

Sveegaard S, Galatius A, Dietz R, Kyhn L, Koblitz JC, Amundin M, Nabe-Nielsen J, Sinding M-HS,  Andersen LW, Teilmann J. Defining management units for cetaceans by combining genetics, morphology, acoustics and satellite tracking. Global Ecology and Conservation. Volume 3, January 2015, Pages 839–850.

Thomsen PF, Willerslev E (2015). Environmental DNA – an emerging tool in conservation for monitoring past and present biodiversity. Biological Conservation 183, 4-18. PR

Valentini A, Taberlet P, Miaud C, Civade R, Herder J, Thomsen PF, Bellemain E, Besnard A, Coissac E, Boyer F, Gaboriaud C, Jean P, Poulet N, Roset N, Copp GH, Geniez P, Pont D, Argillier C, Baudoin J-M, Peroux T, Crivelli AJ, Olivier A, Acqueberge M, Le Brun M, Møller PR, Willerslev E, Dejeanet T. Next-generation monitoring of aquatic biodiversity using environmental DNA metabarcoding. Molecular Ecology. doi:10.1111/mec.13428. 2015. PR

Vestergaard JS, Twomey E, Larsen R, Summers K, Nielsen R. Number of genes controlling a quantitative trait in a hybrid zone of the aposematic frog Ranitomeya imitator. Proceedings of the Royal Society of London B: Biological Sciences 282 (1807), pages 20141950, 2015.

Vinner L, Mourier T, Friis-Nielsen J, Gniadecki R, Dybkaer K, Rosenberg J et al. (2015). Investigation of Human Cancers for Retrovirus by Low-Stringency Target Enrichment and High-Throughput Sequencing. Scientific Reports, 5.

Wales N, Carøe C, Sandoval-Velasco M, Gamba C, Barnett R, Samaniego JA, Ramos Madrigal J, Orlando L, Gilbert MTP. New insights on single-stranded DNA library preparation. BioTechniques 59 (6):368-371. 2015. PR

Welker F, Collins MJ, Thomas JA, Wadsley M, Brace S, Capellini E, Turvey ST, Reguero M, Gelfo J, Kramarz A, Burger J, Thomas-Oates J, Ashford DA, Ashton P, Rowsell K, DM Porter, Kessler B, Fisher R, Baessmann C, Kaspar S, Olsen J, Kelstrup C, Mullin V, Hofreiter M, Willerslev E, Hublin J-J, Orlando O, Southon J, Barnes I, MacPhee RDE. Ancient proteins resolve the evolutionary history of Darwin’s South American ungulates. Nature, Volume:522, Pages: 81–84. 04 June 2015. DOI:doi:10.1038/nature14249

Winther RG, Giordano R, Edge MD, Nielsen R. The mind, the lab, and the field: Three kinds of populations in scientific practice. Studies in History and Philosophy of Science. Part C: Studies in History and Philosophy of Biological and Biomedical Sciences. Vol. 52, pp. 12-21, 2015.

Winther RG, Millstein RL, Nielsen R. Introduction: Genomics and philosophy of race. 2015.

Ziesemer KA, Mann AE, Sankaranarayanan K, Schroeder H, Ozga AT, Brandt BW et al.  Intrinsic challenges in ancient microbiome reconstruction using 16S rRNA gene amplification. Scientific Reports, 516498–19. 2015. PR

Publications 2014

Alexanderson H, Backman J, Cronin TM, Funder S, Ingólfsson O, Jakobsson M, Landvik JY, Löwemark L, Mangerud J, März C, Möller P, O'Regan M, Spielhagen RF. 2014. An Arctic perspective on dating Mid-Late Pleistocene environmental history. Quaternary Science Reviews 92, 9-31. (PR)(CO)

Alfaro-Núñez A and Gilbert MTP (2014). Validation of a sensitive PCR assay for the detection of Chelonid fibropapilloma-associated herpesvirus (CFPHV) in latent turtle infections. Journal of Virological Methods 206:38–41 (PR)

Alfaro-Núñez A, Frost MB, Bojesen AM, Rasmussen I, Zepeda-Mendoza L, Olsen MT and Gilbert MTP (2014). Global distribution of Chelonid fibropapilloma-associated herpesvirus among clinically healthy sea turtles. BMC Evolutionary Biology 14:206 (PR)(OA)

Allentoft ME, Heller R, Oskam CL, Lorenzen ED, Hale ML, Gilbert MTP, Jacomb C, Holdaway RN, Bunce M (2014). Extinct New Zealand megafauna were not in decline before human colonization. PNAS, vol 111, 4922-4927. (PR)

Andresen CS, Kjeldsen KK, Harden B, Nørgaard-Pedersen N & Kjær KH. Outlet glacier dynamics and bathymetry at Upernavik Isstrøm and Upernavik Isfjord, North-West Greenland. 2014 In : Geological Survey of Denmark and Greenland Bulletin. 31, p. 79-82 4 p. (PR)(OA)

Bangsgaard P. 2014: Animal Deposits at H29, A Kerma Ancien cemetery in the northern Dongola Reach. Sudan & Nubia: The Sudan Archaeological Research Society Bulletin vol. 18, 20-25 (PR)

Bangsgaard P. 2014: A commentary to the faunal remains from Tepe Guran. In: P. Mortensen, Excavations at Tepe Guran, The Neolithic Period, Acta Iranica 55. Peeters Publishers, pp. 107-114 (PR)

Bangsgaard P. Nubian Faunal Practices - Exploring the C-Group “Pastoral Ideal” at Nine Cemeteries. In Anderson & Welsby (eds.): Fourth Cataract and Beyond, Proceedings of the 12th International Conference for Nubian Studies, British Museum Publications on Egypt and Nubia 1, Peeters Publishers, pp. 347-356, 2014. PR

Bohmann K, Evans A, Gilbert MTP, Carvalho GR, Creer S, Knapp M, Yu DW, de Bruyn M. Environmental DNA for wildlife biology and biodiversity monitoring. Trends in Ecology & Evolution 08/2014; (PR)(OA)

Bohmann K, Evans A, Gilbert MTP, Carvalho GR, Creer S, Knapp M, Yu DW, de Bruyn M. Erratum: Environmental DNA for wildlife biology and biodiversity monitoring. Trends in Ecology & Evolution 29, (2014), 358 – 367, 01/2014;

Brandt LØ, Schmidt AL, Rast-Eicher A, Mannering U, Kelstrup CD, Olsen JV, Cappellini E. (2014). Species identification of skin objects from Danish bogs. PLoS ONE 9(9): e106875. doi:10.1371/journal.pone.0106875

Brown TA, Cappellini E, Kistler L, Lister DL, Oliveira HR, Wales N, Schlumbaum A. (2014). Recent advances in ancient DNA research and their implications for archaeobotany. Vegetation History and Archaeobotany 10.1007/s00334-014-0489-4.

Cappellini E, Collins MJ, Gilbert MTP. (2014). Unlocking Ancient Protein Palimpsests. Science 343, 1320-22. (PR)

Cardona A, Pagani L, Antao T, Lawson DJ, Eichstaedt CA, Yngvadottir B, Shwe MT, Wee J, Romero IG, Raj S, Metspalu M, Villems R, Willerslev E, Tyler-Smith C, Malyarchuk BA, Derenko MV, Kivisild T Cardona A, Pagani L, Antao T, Lawson DJ, Eichstaedt CA, Yngvadottir B, Shwe MT, Wee J, Romero IG, Raj S, Metspalu M, Villems R, Willerslev E, Tyler-Smith C, Malyarchuk BA, Derenko MV, Kivisild T (2014). Genome-wide analysis of cold adaptation in indigenous Siberian populations. PLoS One 9, e98076. (PR)(OA)

Clemente FJ, Cardona A, Inchley CE, Peter BM, Jacobs G, Pagani L, Lawson DJ, Antão T, Vicente M, Mitt M, DeGiorgio M, Faltyskova Z, Xue Y, Ayub Q, Szpak M, Mägi R, Eriksson A, Manica A, Raghavan M, Rasmussen M, Rasmussen S, Willerslev E, Vidal-Puig A, Tyler-Smith C, Villems R, Nielsen R, Metspalu M, Malyarchuk B, Derenko M, Kivisild T. A (2014). Selective Sweep on a Deleterious Mutation in CPT1A in Arctic Populations. Am J Hum Genet. 95, 584-589 (PR)

De Stephanis R, Giménez J, Esteban R, Gauffier P, García-Tiscar S, Sinding M-HS, Verborgh P. Mobbing-like behavior by pilot whales towards killer whales: a response to resource competition or perceived predation risk? Acta Ethologica (2014): 1-10. (PR)(OA)

Der Sarkissian C, Ermini L, Jónsson H, Alekseev AN, Crubezy E, Shapiro B & Orlando L. Shotgun microbial profiling of fossil remains. Molecular Ecology 23:1780-98, article first published online: 18 MAR 2014, DOI: 10.1111/mec.12690 (PR)

Fabre PH, Vilstrup JT, Raghavan M, Sarkissian CD, Willerslev E, Douzery EJ, Orlando L. (2014). Rodents of the Caribbean: origin and diversification of hutias unravelled by next-generation museomics. Biol. Lett. 10. (PR)(OA)

Gentry A, Lister AM, Roos A, Gilbert MTP, Cappellini E. (2014). The lectotype for the Asian elephant, Elephas maximus Linnaeus, 1758 (Mammalia, Proboscidea) and comments on “primary, secondary and tertiary syntypes” and “virtual lectotype designation”. Bulletin of Zoological Nomenclature 71, 1-6. (PR)(OA)

Gotfredsen AB. (2014). Birds in Subsistence and Culture at Viking Age sites in Denmark. In: Bejenaru L and Serjeantson D (eds.). International Journal of Osteoarchaeology. Special Issue on Bird and Archaeology: Recent research. 24 (3): 365-377. DOI: 10.10002/oa.2367 (PR)

Grayson DK, Meltzer DJ, Buikstra JE, Flannery KV, Fowler CS, Marcus J, O'Connell JF, Piperno DR, Sabloff JA, Smith BD, Thomas DH, Willerslev E, Zeder MA (2014). Early Americans: Respecting ancestors. Science (comment) 345, 390

Hope PR, Bohmann K, Gilbert MTP, Zepeda-Mendoza ML, Razgour O, Jones G. Second generation sequencing and morphological faecal analysis reveal unexpected foraging behaviour by Myotis nattereri (Chiroptera, Vespertilionidae) in winter. Frontiers in Zoology 01/2014; 11:39 (PR)(OA)

Holdaway RN, Allentoft ME, Jacomb C, Oskam CL, Beavan NR, Bunce M (2014). An extremely low-density human population exterminated New Zealand moa. Nature Communications, vol 5: 5436 (PR)

Jacomb C, Holdaway RN, Allentoft ME, Bunce M, Oskam CL, Walter R, Brooks E (2014). High-precision dating and ancient DNA profiling of moa (Aves: Dinornithiformes) eggshell documents a complex feature at Wairau Bar and refines the chronology of New Zealand settlement by Polynesians. Journal of Archaeological Science, vol 50, 24-30. (PR)

Jakobsson M, Andreassen K, Bjarnadóttir LR, Dove D, Dowdeswell JA, England JH, Funder S, Hogan K, Ingólfsson O, Jennings A, Krog-Larsen N, Kirchner N, Landvik JY, Mayer L, Mikkelsen N, Möller P, Niessen F, Nilsson J, O’Regan M, Polyak L, Nørgaard Petersen N, Stein R. 2014. Arctic Ocean glacial history. Quaternary Science Reviews. 92, 40-67. (PR)(CO)(OA)

Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SYW, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, da Fonseca RR, Li J, Zhang F, Li H, Zhou L, Narula N, Liu L, Ganapathy G, Boussau B, Bayzid MS, Zavidovych V, Subramanian S, Gabaldón T, Capella- Gutiérrez S, Huerta-Cepas J, Rekepalli B, Munch K, Schierup M, Lindow B, Warren WC, Ray D, Green RE, Bruford M, Zhan X, Dixon A, Li S, Li N, Huang Y, Derryberry EP, Bertelsen MF, Sheldon F, Brumfield RT, Mello C, Lovell PV, Wirthlin M, Samaniego JA, Vargas Velazquez AM, Alfaro-Núñez A, Campos PF, Petersen B, Sicheritz-Ponten T, Pas A, Bailey T, Scofield P, Bunce M, Lambert D, Zhou Q, Perelman P, Driskell AC, Shapiro B, Xiong Z, Zeng Y, Liu S, Li Z, Liu B, Wu K, Xiao J, Yinqi X, Zheng Q, Zhang Y, Yang H, Wang J, Smeds L, Rheindt FE, Braun M, Fjeldsa J, Orlando L, Barker K, Jønsson KA, Johnson W, Koepfli K-P, O'Brien S, Haussler D, Ryder OA, Rahbek C, Willerslev E, Graves GR, Glenn TC, McCormack J, Burt D, Ellegren J, Alström P, Edwards SV, Stamatakis A, Mindell DP, Cracraft J, Braun EL, Warnow T, Jun W, Gilbert MTP, Zhang G (2014). Whole Genome Analyses Resolve the Early Branches in the Tree of Life of Modern Birds. Science 12, 1320-1331(PR)(OA)

Jarvis, ED; Mirarab, S; Aberer, A; Houde, P; Li, C; Ho, S; Faircloth, BC; Nabholz, B; Howard, JT; Suh, A; Weber, CC; Fonseca, RR; Alfaro-Núñez, A; Narula, N; Liu, L; Burt, D; Ellegren, H; Edwards, SV; Stamatakis, A; Mindell, DP; Cracraft, J; Braun, EL; Warnow, T; Jun, W; Gilbert, MTP; Zhang, G (2014). Phylogenomic analyses data of the Avian Phylogenomics Project. GigaScience, 27. November 2014, (PR)(OA)

Jónsson H, Schubert M, Seguin-Orlando A, Ginolhac A, Petersen L, Fumagalli M, Albrechtsen A, Petersen B, Korneliussen TS, Vilstrup JT, Lear T, Myka J, Lundquist J, Miller DC, Alfarhan AH, Alquraishi SA, Al-Rasheid KAS, Stagegaard J, Strauss G, Bertelsen MF, Sicheritz-Ponten T, Antczak DF, Bailey E, Nielsen R, Willerslev E, Orlando L. 2014. Speciation with gene flow in quids despite extensive chromosomal
plasticity. PNAS 2014 111 (52) 18655-18660; published ahead of print December 1, 2014, doi:10.1073/pnas.1412627111 (PR)

Juras A, Dabert M, Kushniarevich A, Malmström H, Raghavan M, Kosicki JZ, Metspalu E, Willerslev E, Piontek J (2014). Ancient DNA Reveals Matrilineal Continuity in Present-Day Poland over the Last Two Millennia. PLoS One 9:e110839. (PR)(OA)

Kelly RP, Port JA, Yamahara KM, Martone RG, Lowell N, Thomsen PF, Mach ME, Bennett M, Prahler E, Caldwell MR, Crowder LB. Harnessing DNA to improve environmental management. Science, 27. June 2014, Vol. 344, Issue 6191, pp. 1455-1456. (PR)

Kerner S, Dann R and Bangsgaard P (eds.). 2014: Climate Change in Ancient Societies. Copenhagen: Museum Tusculanum Press, (341 pages)

Khan SA, Kjeldsen KK, Kjær KH, Bevan S, Luckman A, Aschwanden A, Bjørk AA, Korsgaard NJ, Box EJ, van den Broeke M, van Dam T, Fitzner A. Glacier dynamics at Helheim and Kangerdlugssuaq glaciers, southeast Greenland, since the Little Ice Age. Cryosphere, Vol. 8, 2014, s. 1497-1507. (PR)(OA)

Khan SA, Kjær KH, Bevis M, Bamber J, Wahr J, Kjeldsen KK, Bjørk AA, Korsgaard NJ, Stearns LA, van den Broeke MR, LiuL, Larsen NK, Muresan IS. Sustained mass loss of the northeast Greenland ice sheet triggered by regional warming. Nature Climate Change, 16.03.2014, s. 292-299. (PR)

Kjeldsen KK, Mortensen J, Bendtsen J, Petersen D, Lennert K & Rysgaard S. Ice-dammed lake drainage cools and raises surface salinities in a tidewater outlet glacier fjord, West Greenland. 16 Jun 2014. In : Journal of Geophysical Research: Earth Surface. 119, 6, p. 1310-1321 11 p. (PR)

Kjær KH, Bjørk AA, Funder SV, Groth-Hansen F, Houmark-Nielsen M, Khan SA, Kjeldsen KK, Korsgaard NJ, Larsen NK, Meldgaard M, Ries CJ, Tholstrup HH. The Greenland Ice Sheet: 80 years of climate change seen from the air. Copenhagen : Natural History Museum of Denmark, Faculty of Science, University of Copenhagen, 2014. 180 p.

Klimova A, Phillips CD, Fietz K, Olsen MT, Harwood J, Amos W, Hoffman JL. 2014. Global population structure and demographic history of the grey seal. Molecular Ecology, 23(16): 3999–4017 (PR)

Lea JM, Mair DWF, Nick FM, Rea BR, Weidick A, Kjær KH, Morlighem M, Van As D, Schofield JE. Terminus-driven retreat of a major southwest Greenland tidewater glacier during the early 19th century: insights from glacier reconstructions and numerical modelling. Journal of Glaciology, vol 60, issue 220, 2014, p.333-344. (PR)

Lecavalier B, Milne GA, Simpson MJR, Wake L, Huybrechts P, Tarasov L, Kjeldsen KK, Funder SV, Long AJ, Woodroffe SA, Dyke AS, & Larsen NK. A model of Greenland ice sheet deglaciation constrained by observations of relative sea level and ice extent. 2014. In : Quaternary Science Reviews. 102, p. 54-84 31 p. (PR)

Liu S, Lorenzen ED, Fumagalli M, Li B, Harris K, Xiong Z, Zhou L, Korneliussen TS, Somel M, Babbitt C, Wray G, Li J, He W, Wang Z, Fu W, Xiang X, Morgan CC, Doherty A, O’Connell MJ, McInerney JO, Born EW, Dalén L, Dietz R, Orlando L, Sonne C, Zhang G, Nielsen R, Willerslev E, Wang J. Population genetics reveal recent speciation and rapid evolutionary adaptation in polar bears. Cell, Vol. 157, Issue 4, 8. May 2014, pp. 755,757 (PR)

Malaspinas A-S,  Lao O, Schroeder H, Rasmussen M, Raghavan M, Moltke I, Campos PF, Sagredo FS, Rasmussen S, Gonçalves VF, Albrechtsen A,  Allentoft ME, Johnson PLF, Li M, Reis S, Bernardo DV, DeGiorgio M, Duggan AT, Bastos M, Wang Y, Stenderup J, Moreno-Mayar JV, Brunak S, Sicheritz-Ponten T, Hodges E,  Hannon GJ, Orlando L,  Price TD, Jensen JD, Nielsen R,  Heinemeier J, Olsen J, Rodrigues-Carvalho C, Lahr MM,  Neves VA, Kayser M, Higham T, Stoneking M, Pena SDJ, and Willerslev E (2014). Two ancient human genomes reveal Polynesian ancestry among the indigenous Botocudos of Brazil. Curr. Biol. 24, R1035-R1037 (PR)

Malaspinas A-S, Tange O, Moreno-Mayar JV, Rasmussen M, DeGiorgio M, Wang Y, Yong, Valdiosera CE, Politis GG,  Willerslev E, Nielsen R (2014). bammds: a tool for assessing the ancestry of low-depth whole-genome data using multidimensional scaling (MDS). Bioinformatics 30, 2962-2964 (PR)(OA)

Martin MD, Ho SYW, Wales N, Ristaino JB, Gilbert MTP. 2014. Persistence of the mitochondrial lineage responsible for the Irish potato famine in extant New World Phytophthora infestans. Molecular Biology and Evolution 31:1414-1420. (PR)

Martin M, Zimmer EA, Olsen MT, Foote AD, Gilbert MTP, Brush GS (2014). Herbarium specimens reveal a historical shift in phylogeographic structure of common ragweed during native range disturbance. Molecular Ecology, 23(7): 1701-1716 (PR)

Mourier T, Nielsen LP, Hansen AJ, and Willerslev E (2014). Transposable elements in cancer as a by-product of stress-induced evolvability. Front Genet. 2014; 5: 156. (PR)(OA)

Olalde I, Allentoft ME, Sánchez-Quinto F, Santpere G, Chiang CWK, DeGiorgio M, Prado-Martinez J, Rodríguez JA, Rasmussen S,  Quilez J, Ramírez O, Marigorta UM, Fernández-Callejo M, Prada ME, Encinas JMV, Nielsen R, Netea MG, Novembre J, Sturm RA,  Sabeti P, Marquès-Bonet T, Navarro A, Willerslev E & Lalueza-Fox C. Derived immune and ancestral pigmentation alleles in a 7,000-year-old Mesolithic European. Nature (2014) doi:10.1038/nature12960 (PR)

Olsen MT, Andersen LW, Dietz R, Teilmann J, Härkönen T & Siegismund HR. (2014). Integrating genetic data and population viability analyses for the identification of harbour seal (Phoca vitulina) populations and management units. Molecular Ecology, 23, 815-831. doi:10.1111/mec.12644. (PR)

Orlando L. 2014. A 400,000-year-old mitochondrial genome questions phylogenetic relationships amongst archaic hominins. Bioessays 36:598-605 (PR)

Orlando L, Willerslev E. 2014. Evolution. An epigenetic window into the past? Science 345:511-512. (PR)

Orlando L, Cooper A. Using ancient DNA to understand evolutionary and ecological processes. Annual Reviews of Ecology, Evolution, and Systematics. First published online as a Review in Advance on October 6, 2014. DOI: 10.1146/annurev-ecolsys-120213-091712. (PR)

Overballe-Petersen S and Willerslev E (2014). Horizontal transfer of short and degraded DNA has evolutionary implications for microbes and eukaryotic sexual reproduction. Bioessays 36, 1005-1010 (PR)(OA)

Pedersen JS, Valen E, Vargas Velazquez AM, Parker BJ, Rasmussen M, Lindgreen S, Lilje B, Tobin DJ, Kelly TK, Vang S, Andersson R, Jones PA, Hoover CA, Tikhonov A, Prokhortchouk E, Rubin EM, Sandelin A, Gilbert MT, Krogh A, Willerslev E, Orlando L.  Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome. Genome Res. 2014, 24:454-66. (PR)(OA)

Perry GH, Orlando L. 2015. Ancient DNA and human evolution. J Hum Evol, S0047-2484(14)00299-1. doi: 10.1016/j.jhevol.2014.12.002 (PR)

Raghavan M, DeGiorgio M, Albrechtsen A, Moltke I, Skoglund P, Korneliussen TS, Grønnow B, Appelt M, Gulløv HC, Friesen TM, Fitzhugh W, Malmström H, Rasmussen S, Olsen J, Melchior L, Fuller BT, Fahrni SM, Stafford Jr. T, Grimes V, Renouf MAP, Cybulski J, Lynnerup N, Lahr MM, Britton K, Knecht R, Arneborg J, Metspalu M, Cornejo OE, Malaspinas A-S, Wang Y, Rasmussen M, Raghavan V, Hansen TVO,  Khusnutdinova E, Pierre T, Dneprovsky K, Andreasen C, Lange H, Hayes MG, Coltrain J, Spitsyn VA, Götherström A, Orlando L, Kivisild T,  Villems R, Crawford MH, NielsenFC, Dissing J, Heinemeier J, Meldgaard M, Bustamante C, O’Rourke DH, Jakobsson M, Gilbert MTP, Nielsen R, Willerslev E. The genetic prehistory of the New World Arctic. Science 29 August 2014: Vol. 345 no. 6200. Abstract. Reprint. Full text. (PR)(OA)

Raghavan M, Skoglund P, Graf K, Metspalu M, Albrechtsen A, Moltke I, Rasmussen S, Stafford TW, Orlando O, Metspalu E, Karmin M, Tambets K, Rootsi S, Mägi R, Campos PF, Balanovska E, Balanovsky O, Khusnutdinova E, Litvinov S, Osipova LP, Fedorova SA, Voevoda MI, DeGiorgio M, Sicheritz-Ponten T, Brunak S, Demeshchenko S, Kivisild T, Villems  R,Nielsen R, Jakobsson M, and Willerslev E (2014). Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans. Nature 505, 87-91. (PR)

Raghavan M, Espregueira-Themudo G, Zazula GD, Smith CI, Campos PF. Musk Ox (Ovibos moschatus) of the Mammoth steppe: diet as a proxy for palaeoclimate and palaeoecological reconstruction. Quaternary Science Reviews 102(0):192-201 (2014) (PR)

Rasmussen M, Anzick SL, Waters MR, Skoglund P, DeGiorgio M, Stafford Jr TW, Rasmussen S, Moltke I, Albrechtsen A, Doyle SM, Poznik GD, Gudmundsdottir V, Yadav R, Malaspinas A-S, White SS, Allentoft ME, Cornejo OE, Tambets K, Eriksson A, Heintzman PD, Karmin M, Korneliussen TS, Meltzer DJ, Pierre TL, Stenderup J, Saag L, Warmuth VM, Lopes MC, Malhi RS, Brunak S, Sicheritz-Ponten T, Barnes I, Collins M, Orlando L, Balloux F, Manica A, Gupta R, Metspalu M, Bustamante CD, Jakobsson M,  Nielsen R & Willerslev E. The genome of a Late Pleistocene human from a Clovis burial site in western Montana. Nature  506, 225–229 (13 February 2014) doi:10.1038/nature13025 (PR)

Schubert M, Ermini L, Sarkissian CD, Jónsson H, Ginolhac A, Schaefer R, Martin MD, Fernández R, Kircher M, McCue M, Willerslev E, and Orlando L. Characterization of ancient and modern genomes by SNP detection and phylogenomic and metagenomic analysis using PALEOMIX. Nature Protocols. 2014 May;9(5):1056-82. doi: 10.1038/nprot.2014.063. Epub 2014 Apr 10. PubMed PMID: 24722405.

Schubert M, Jónsson H, Chang D, Der Sarkissian C, Ermini L, Ginolhac A, Albrechtsen A, Dupanloup I, Foucal A, Petersen B, Fumagalli M, Raghavan M, Seguin-Orlando A, Korneliussen TS, Velazquez AM, Stenderup J, Hoover CA, Rubin CJ, Alfarhan AH, Alquraishi SA, Al-Rasheid KA, MacHugh DE, Kalbfleisch T, MacLeod JN, Rubin EM, Sicheritz-Ponten T, Andersson L, Hofreiter M, Marques-Bonet T, Gilbert MT, Nielsen R, Excoffier L, Willerslev E, Shapiro B, Orlando L. 2014. Prehistoric genomes reveal the genetic foundation and cost of horse domestication. PNAS Dec 15. pii: 201416991. (PR)

Seguin-Orlando A, Korneliussen TS, Sikora M, Malaspinas A-S, Manica A, Moltke I, Albrechtsen A, Ko A, Margaryan A, Moiseyev V, Goebel T, Westaway M, Lambert D, Khartanovich V, Wall JD, Nigst PR, Foley RA, Lahr MM, Nielsen R,  Orlando L, Willerslev E. Genomic structure in Europeans dating back at least 36,200 years. Science 28 November 2014: Vol. 346 no. 6213 pp. 1113-1118, DOI: 10.1126/science.aaa0114. Published Online November 6 2014 (PR)(OA)

Seixas AF, Juste X, Campos PF, Carneiro M, Ferrand N, Alves PC, Melo-ferreira J. Colonization history of Mallorca Island by the European rabbit, Oryctolagus cuniculus, and the Iberian hare, Lepus granatensis (Lagomorpha: Leporidae) Biological Journal of the Linnean Society 111(4): 748-760 (2014). (PR)

Shao C, Li Q, Chen S, Zhang P, Lian J, Hu Q, Sun B, Jin L, Liu S, Wang Z, Zhao H, Jin Z, Liang Z, Li Y, Zheng Q, Zhang Y, Wang J, Zhang G. Epigenetic modification and inheritance in sexual reversal of fish. Genome Research 2014, 24:604–615. (PR)(CO)(OA)

Skoglund P, Malmström H, Omrak A, Raghavan M, Valdiosera C, Günther T, Hall P, Tambets K, Parik J, Sjögren K-G, Apel J, Willerslev E, Stor J, Götherström A, Jakobsson M (2014). Genomic Diversity and Admixture differs for Stone-Age Scandinavian Foragers and Farmers. Science 344, 747-750. (PR)

Tsangaras K, Wales N, Sicheritz-Pontén T, Rasmussen S, Michaux J, Ishida Y, Morand S, Kampmann M-L, Gilbert MTP, Greenwood AD. 2014. Hybridization Capture Using Short PCR Products Enriches Small Genomes by Capturing Flanking Sequences (CapFlank). PLoS One 9:e109101. (PR)(OA)

Wales N, Andersen K, Cappellini E, Ávila-Arcos MC, Gilbert MTP. 2014. Optimization of DNA recovery and amplification from non-carbonized archaeobotanical remains. PLoS One 9:e86827. (PR)(OA)

Wang X, Li Q, Lian J, Li L, Jin L, Cai H, Xu F, Qi H, Zhang L, Wu F, Meng J, Que H, Fang X, Guo X, Zhang G. Genome-wide and single-base resolution DNA methylomes of the Pacific oyster Crassostrea gigas provide insight into the evolution of invertebrate CpG methylation. BMC Genomics 2014, 15:1119. (PR)(CO)(OA)

Warinner C, Rodrigues JFM, Vyas R, Trachsel C, Shved N, Grossmann J, Radini A, Hancock Y, Tito RY, Fiddyment S, Speller C, Hendy J, Charlton S, Luder HU, Salazar-García DC, Eppler E, Seiler R , Hansen LH, Castruita JAS , Barkow-Oesterreicher S, Teoh KY , Kelstrup CD, Olsen JV, Nanni P, Kawai T, Willerslev E, von Mering C, Lewis CM, Collins MJ, Gilbert MTP, Rühli F & Cappellini E, 2014, Pathogens and host immunity in the ancient human oral cavity. Nature genetics ., (PR)(OA)

White NE, Bunce M, Mawson PR, Dawson R, Saunders DA, Allentoft ME (2014). Identifying conservation units after large-scale landclearing: a spatio-temporal molecular survey of endangered white-tailed black-cockatoos (Calyptorhynchus spp.). Diversity and Distributions, vol 20, 1208-1220. (PR)(OA)

Willerslev E, Davison J, Moora M, Zobel M, Coissac E, Edwards ME, Lorenzen ED, Vestergård M, Gussarova G, Haile J, Craine J, Gielly L, Boessenkool S, Epp LS, Pearman PB, Cheddadi R, Murray D, Bråthen KA, Yoccoz N, Binney H, Cruaud C, Wincker P, Goslar T, Alsos IG, Bellemain E et al. Fifty thousand years of Arctic vegetation and megafaunal diet. Nature  506, 47–51 (06 February 2014) doi:10.1038/nature12921. (PR)

Zhang G, Li C, Li Q, Li B, Larkin DM, Lee C, Storz JF, Antunes A, Greenwold MJ, Meredith RW, Ödeen A, Cui J, Zhou Q, Xu L, Pan H, Wang Z, Jin L, Zhang P, Hu H, Yang W, Hu J, Xiao J, Yang Z, Liu Y, Xie Q, Yu H, Lian J, Wen P, Zhang F, Li H, Zeng Y, Xiong Z, Liu S, Zhou L, Huang Z, An N, Wang J, Zheng Q, Xiong Y, Wang G, Wang B, Wang J, Fan Y, da Fonseca RR, Alfaro-Núñez A, Schubert M, Orlando L, Mourier T, Howard JT, Ganapathy G, Pfenning A, Whitney O, Rivas MV, Hara E, Smith J, Farré M, Narayan J, Slavov G, Romanov MN, Borges R, Machado JP, Khan I, Springer MS, Gatesy J, Hoffmann FG, Opazo JC, Håstad O, Sawyer RH, Kim H, Kim K-W, Kim HJ, Cho S, Li N, Huang Y, Bruford MW, Zhan X, Dixon A, Bertelsen MF, Derryberry E, Warren W, Wilson RK, Li S, Ray DA, Green RE, O’Brien SJ, Griffin D, Johnson WE, Haussler D, Ryder OA, Willerslev E, Graves GR, Alström P, Fjeldså J, Mindell DP, Edwards SV, Braun EL, Rahbek C, Burt DW, Houde P, Zhang Y, Yang H, Wang J, Jarvis ED, Gilbert MTP, Wang J (2014) & Avian Genome Consortium (2014). Comparative Genomics Reveals Insights into Avian Genome Evolution and Adaptation. Science 12, 1311-1320. (PR)(OA)

Publications accepted 2013

Enghoff IB. History of herring and cod in Denmark – based on bones. In: Barrett, J. and C. Johnstone (eds.) Cod and Herring: The Chronology, Causes and Consequences of Medieval Sea Fishing. Oxford: Oxbow Books.

Publications 2013Til toppen

Alexanderson H, Backman J, Cronin TM, Funder S, Ingólfsson O, Jakobsson M, Landvik JY, Löwemark L, Mangerud J, März C, Möller P, O'Regan M, Spielhagen RF. 2013. An Arctic perspective on dating Mid-Late Pleistocene environmental history. Quaternary Science Reviews. (PR)(CO)

Allentoft ME. Recovering samples for ancient DNA research—guidelines for the field archaeologist. Antiquity Volume 087 Issue 338 December 2013.

Alquezar-Planas DE, Mourier T, Bruhn CAW, Hansen AJ, Vitcetz SN, Mørk S, Gorodkin J, Nielsen HA, Guo Y, Sethuraman A, Paxinos EE, Shan T, Delwart EL, Nielsen LP. Discovery of a divergent HPIV4 from respiratory secretions using second and third generation metagenomic sequencing. Scientific Reports (Nature) 3, Article number: 2468 doi:10.1038/srep02468

Avila Arcos MDC , Ho SYW, Ishida Y, Nikolaidis N, Tsangaras K, Hönig K, Medina R , Rasmussen M , Fordyce SL , Calvignac-Spencer S , Willerslev E, Gilbert MTP , Helgen KM, Roca AL & Greenwood AD.  One hundred twenty years of koala retrovirus evolution determined from museum skins. Molecular Biology and Evolution , vol 30, no. 2, pp. 299-304. 2013, (OA)

Ávila-Arcos MC, Ho SYW, Ishida Y, Nikolaidis N, Tsangaras K, Hönig K, Medina R, Rasmussen M, Fordyce SL, Calvignac-Spencer S, Willerslev E, Gilbert MTP, Helgen KM, Roca AL & Greenwood AD. Erratum: One hundred twenty years of Koala retrovirus evolution determined from museum skins. (Molecular Biology and Evolution (2013) 30:2 (299-304) DOI: 10.1093/molbev/mss223) ' Molecular Biology and Evolution , vol 30, no. 5, pp. 1237.,

Bangsgaard P, (2013). Pangrave Faunal Practices - Ritual Deposits at five Cemeteries in Lower Nubia. ICAZ 2010 Conference: Animals in Funerary Space. Anthropozoologica 48 vol 2, 5-15 (PR) (OA)

Bellemain E, Davey ML, Kauserud H, Epp LS, Boessenkool S, Coissac E, Geml J, Edwards M, Willerslev E, Gussarova G, Taberlet P & Brochmann C. Fungal palaeodiversity revealed using high-throughput metabarcoding of ancient DNA from arctic permafrost. Environmental Microbiology , vol 15, no. 4, pp. 1176-1189.,

Bohmann K, Schnell IB, Gilbert MTP. When bugs monitor biodiversity. Molecular Ecology, 22(4), 909–911, 2013

Brotherton P, Haak W, Templeton J, Brandt G, Soubrier J, Adler C, Richards SM, Der Sarkissian C, Ganslmeier R, Friederich S, Dresely V, van Oven M, Kenyon R, Van der Hoek MB, Korlach J, Luong K, Ho SY, Quintana-Murci L, Behar DM, Meller H, Alt KW, Cooper A. Genographic Consortium, 2013. Neolithic mitochondrial haplogroup H genomes and the genetic origins of Europeans. Nature Communications 4:1764.Til toppen

Bønnelykke K, Sleiman P, Nielsen K, Kreiner-Møller E, Mercader JM, Belgrave D, den Dekker HT, Husby A, Sevelsted A, Faura-Tellez G, Mortensen LJ, Paternoster L, Flaaten R, Mølgaard A, Smart DE, Thomsen PF, Rasmussen MA, Bonàs-Guarch S, Holst C, Nohr EA, Yadav R, March ME, Blicher T, Lackie PM, Jaddoe VWV, Simpson A, Holloway JW, Duijts L, Custovic A, Davies DE, Torrents D, Gupta R, Hollegaard MV, Hougaard DM, Hakonarson H, Bisgaard H. A genome-wide association study identifies CDHR3 as a susceptibility locus for early childhood asthma with severe exacerbations. Nature Genetics (2013) doi:10.1038/ng.2830. Published online  17 November 2013

Campana GM, Robinson T, Campos PF, Tuross N. Independent confirmation of a diagnostic sheep/goat peptide sequence through DNA analysis and further exploration of its taxonomic utility within the Bovidae. J. Archaeol. Sci. 40 (2), February 2013: 1421-1424

Cao H, Wang Y, Zhang W, Chai X, Zhang X, Chen S, Yang F, Zhang C, Guo Y, Liu Y, Tang Z, Chen C, Xue Y, Zhen H, Xu Y, Rao B, Liu T, Zhao M, Zhang W, Li Y, Zhang X, ellier LC, Krogh A, Kristiansen K, Wang J and Li J. A short-read multiplex sequencing method for reliable, cost-effective and high-throughput genotyping in large-scale studies. Hum. Mutat., 34(12):1715–1720, Dec 2013. (PR)

Cappellini E, Gentry A, Palkopoulou E, Ishida Y, Cram D, Roos A-M, Watson M, Johansson US, Fernholm B, Agnelli P, Barbagli F, Littlewood DTJ, Kelstrup CD, Olsen JV, Lister AM, Roca AL, Dalén L, Gilbert MTP. Resolution of the type material of the Asian elephant, Elephas maximus Linnaeus, 1758 (Proboscidea, Elephantidae). Article first published online: 4 NOV 2013. DOI: 10.1111/zoj.12084

Cardoso JL, Vilstrup JT, Eisenmann V, Orlando L. First evidence of Equus asinus L. in the Chalcolithic disputes the Phoenicians as the first to introduce donkeys into the Iberian Peninsula. Journal of Archaeological Science (2013) 40:4483–4490.

Carpenter ML, Buenrostro JD, Valdiosera C, Schroeder H, Allentoft ME, Sikora M, Rasmussen M, Gravel S, Guillén S, Nekhrizov G, Leshtakov K, Dimitrova D, Theodossiev N, Pettener D, Luiselli D, Sandoval K, Moreno-Estrada A, Li Y, Wang J, Gilbert MTP, Willerslev E, Greenleaf WJ. Pulling out the 1 %: Whole-Genome Capture for the Targeted Enrichment of Ancient DNA Sequencing Libraries. The American Journal of Human Genetics, 25. October 2013.

Dal Zotto M, Di Domenico M, Garraffoni A. & Sørensen MV (2013). Franciscideres gen. nov. - a new, highly aberrant kinorhynch genus from Brazil, with an analysis of its phylogenetic position. Systematics and Biodiversity 11: 303-321.

Der Sarkissian C, Balanovsky O, Brandt G, Khartanovich V, Buzhilova A, Koshel S, Zaporozhchenko V, Gronenborn D, Moiseyev V, Kolpakov E, Shumkin V, Alt KW, Balanovska E, Cooper A, Haak W. Genographic Consortium, 2013. Ancient DNA reveals prehistoric gene-flow from Siberia in the complex human population history of North East Europe. PLoS Genetics 9(2):e1003296.

Fernández R, MacLeod CD, Pierce GJ, Covelo P, López A, Torres-Palenzuela J, Valavanis V and Santos MB, 2013. Inter-specific and seasonal comparison of the niches occupied by small cetaceans off North-West Iberia. Continental Shelf Research 64: 88–98.

Fietz K, Graves JA, Olsen MT (2013). Control Control Control: A Reassessment and Comparison of GenBank and Chromatogram mtDNA Sequence Variation in Baltic Grey Seals (Halichoerus grypus). PLoS ONE 8(8):e72853. doi:10.1371/journal.pone.0072853Til toppen

Foote AD, Kaschner K, Schultze S, Gariloa C, Ho SYW, Higham TFG, van der Es H, Embling C, Gregersen K, Johansson F, Willerslev E, Gilbert MTP. Ancient DNA reveals that bowhead whale lineages survived Late Pleistocene climate change and habitat shifts. Nature Communications 4, Article number:1677, doi:10.1038/ncomms2714

Fordyce SL, Kampmann M-L, van Doorn N, Gilbert MTP. Long-term RNA persistence in postmortem contexts. Investigative Genetics 2013, 4:7 doi:10.1186/2041-2223-4-7.

Fordyce SL, Bragstad K, Pedersen SS, Jensen TG, Gahrn-Hansen B, Daniels R, Hay A, Kampmann M-L, Bruhn CAW, Moreno-Mayar JV, Ávila-Arcos MC, Gilbert MTP, Nielsen LP. Genetic diversity among pandemic 2009 influenza viruses isolated from a transmission chain. Virology Journal 2013, 10:116.

Fordyce SL, Avila-Arcos MC, Rasmussen M, Cappellini E, Romero-Navarro JA, Wales N, Alquezar-Planas DE, Penfield S, Brown TA, Vielle-Calzada J-P, Montiel R, Jørgensen T, Odegaard N, Jacobs M, Arriaza B, Higham TFG, Bronk Ramsey C, Willerslev E, Gilbert MTP. Deep sequencing of RNA from ancient maize kernels. PLoS ONE 8:e50961 (2013);

Gotfredsen AB. (2013). The role of birds as grave gifts in richly furnished Roman Iron Age inhumation graves c. 1-375 AD, eastern Denmark. Anthropozoologica 48 (2): 355-370.

Gonçalves VF , Stenderup J , Rodrigues-Carvalho C, Silva HP, Gonçalves-Dornelas H, Líryo A, Kivisild T, Malaspinas A-S, Campos PF, Willerslev E, Pena SDJ & Rasmussen M. Identification of Polynesian mtDNA haplogroups in remains of Botocudo Amerindians from Brazil. PNAS Early Edition , vol 110, no. 16, pp. 6465-6469., 2013.

Guillot G &  Rousset F. Dismantling the Mantel tests. Methods in Ecology and Evolution. 4(4), 336-344, 2013

Iversen LL, Rannap R , Thomsen PF , Kielgast J, Sand-Jensen K. How do low dispersal species establish large range sizes? The case of the water beetle Graphoderus bilineatus. Ecography 36: 770-777. 2013

Jakobsson M, Andreassen K, Bjarnadóttir LR, Dove D, Dowdeswell JA, England JH, Funder S, Hogan K, Ingólfsson O, Jennings A, Krog-Larsen N, Kirchner N, Landvik JY, Mayer L, Mikkelsen N, Möller P, Niessen F, Nilsson J, O’Regan M, Polyak L, Nørgaard Petersen N, Stein R. 2013. Arctic Ocean glacial history. Quaternary Science Reviews. (PR)(CO)

Jónsson H, Ginolhac A, Schubert M, Johnson P and Orlando, L. mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters. Bioinformatics, doi: 10.1093/bioinformatics/btt193. First published online: April 23, 2013

Jørgensen A, Kristensen RM, Møller PR & Bangsgaard P, (2013). Marinbiologiske undersøgelser ved Al Zubarah, Qatar i 2012. In: Dyr, i Natur og Museum 2013. Copenhagen: The Natural History Museum of Denmark, 7-11

Khan SA , Kjær KH , Korsgaard NJ , Wahr J, Joughin IR, Timm LH, Bamber JL, van den Broeke MR, Stearns LA, Hamilton GS, Csatho BM, Nielsen K, Hurkmans R & Babonis G. Recurring dynamically-induced thinning during 1985-2010 on Upernavik Isstrøm, West Greenland. Journal of Geophysical Research: Earth Surface , vol 118, pp. 1-11, 2013

Kjeldsen KK , Khan SA, Wahr J , Korsgaard NJ , Kjær KH , Bjørk AA , Hurkmans R, van den Broeke MR, Bamber JL & van Angelen JH. Improved ice loss estimate of the northwestern Greenland Ice Sheet. Journal of Geophysical Research: Solid Earth , vol 118, pp. 1-11, 2013

Kjeldsen KK, Kjær KH, Bjørk AA, Khan SA, Korsgaard NJ, Funder SV, Larsen NK, Vinther B, Andresen CS, Long AJ, Woodroffe SA, Hansen ES, Odgaard BV, Olsen J, Bamber JL, van den Broeke M & Willerslev E. Mass loss from the southern half of the Greenland Ice Sheet since the Little Ice Age Maximum: - GRISO workshop, Beverly, MA, United States, 04/06/13 - 07/06/13

Korneliussen TS, Moltke I, Albrechtsen A, Nielsen R. Calculation of Tajima's D and other neutrality test statistics from low depth next-generation sequencing data. BMC Bioinformatics 2013 Oct. 2; 14(1):289 (OA)

Kunes P, Sørensen MK, Buylaert J-P, Murray AS, Houmark-Nielsen M, Odgaard BV. A new Middle Pleistocene interglacial record from Denmark: Chronostratigraphic correlation, palaeovegetation and fire dynamics. Boreas Volume 42, Issue 3, July 2013, Pages: 596–612, DOI 10.1111/bor.12002

Larsen NK, Funder S, Kjær KH, Kjeldsen KK, Knudsen MF, Linge H. Rapid early Holocene ice retreat in West Greenland. Quaternary Science Reviews, 6. July 2013. (PR)(CO)

Martin MD, Cappellini E, Samaniego JA, Zepeda ML, Campos PF, Seguin-Orlando A, Wales N, Orlando L, Ho SYW, Dietrich FS, Mieczkowski PA, Heitman J, Willerslev E, Krogh A, Ristaino JB, Gilbert MTP. Reconstructing genome evolution in historic samples of the Irish potato famine pathogen. Nature Communications, 2013/07/18/online. Supplementary information available for this article at

Mayer J, Tsangaras K, Heeger F, Ávila-Arcos M, Stengleine MD, Chen W, Sun W, Mazzonic CJ, Osterrieder N, Greenwood AD. A novel endogenous betaretrovirus group characterized from polar bears (Ursus maritimus) and giant pandas (Ailuropoda melanoleuca). Virology, Online 29. May 2013. toppen

Menzel P, Frellsen J, Plass M, Rasmussen SH and Krogh A. On the accuracy of short read mapping. Methods Mol. Biol., 1038:39–59, 2013. (PR)

Meredith CL, Buenrostro JD, Valdiosera VC, Schroeder H, Allentoft ME, Sikora, M, Rasmussen M, Gravel S, Guillen S, Nekhrizov N, Leshtakov K, Dimitrova D, Theodossiev N, Pettener D, Luiselli D, Sandoval K, Moreno-Estrada A, Li Y, Wang J, Gilbert MTP, Willerslev E, Greenleaf WJ, Bustamante CD. (2013). Pulling out the 1%: Whole-Genome Capture for the Targeted Enrichment of Ancient DNA Sequencing Libraries. Am. J. Hum. Gen. 93, 852-864.

Mikkelsen N, Elberling B, Ernstsen V, Friborg T, Funder S, Hansen BU, Kokfelt U, Korstgaard NJ, Bruun Kristensen J, Kuijpers A, Laier T, Nielsen T & Nørgaard-Pedersen N. 2013: Impact on permafrost, gashydrates and periglacial processes folIowing climate changes in Greenland. Final report for the Geocenter project PERMAGAS. Danmarks og Grønlands Geologiske Undersøgelse, Rapport 2013/95, 14 pp

Mortier F, Rossi V, Guillot G, Gourlet-Fleury S, Picard N. Population dynamics of species-rich ecosystems: the mixture of matrix population models approach. Methods in Ecology and Evolution, 4(4), 316-326, 2013

Moura AE, Nielsen SCA, Vilstrup JT, Moreno-Mayar V, Gilbert MTP, Gray H, Natoli A, Möller L, Hoelzel AR. Recent diversification of a marine genus tracks habitat preference and environmental change. Systematic Biology, Epub 8 Aug. 2013. doi: 10.1093/sysbio/syt051

Möller P, Östlund O, Barnekow L, Sandgren P, Palmbo F, Willerslev E. Living at the margin of the retreating Fennoscandian Ice Sheet: The early Mesolithic sites at Aareavaara, northernmost Sweden. The Holocene 23, 104-116, (2013),

Neuhaus B, Pardos F, Sørensen MV. & Higgins RP (2013). Redescription, morphology, and biogeography of Centroderes spinosus (Reinhard, 1881) (Kinorhyncha, Cyclorhagida) from Europe. Cahiers de Biologie Marine 54: 109-131.

Neuhaus B. & Sørensen MV (2013). Populations of Campyloderes sp. (Kinorhyncha, Cyclorhagida): One global species with significant morphological variation? Zoologischer Anzeiger 252: 48-75.

Neves RC, Bailly X, Leasi F, Reichert H, Sørensen MV. & Kristensen RM (2013). A complete three-dimensional reconstruction of the myoanatomy of Loricifera: comparative morphology of an adult and a Higgins larva stage. Frontiers in Zoology 10: 19.

Orlando L, Ginolhac A, Zhang G, Froese D, Albrechtsen A, Stiller M, Schubert M, Cappellini E, Petersen B, Moltke I, Johnson PLF, Fumagalli M, Vilstrup JT, Raghavan M, Korneliussen T, Malaspinas AS, Vogt J, Szklarczyk D, Kelstrup CD, Vinther J, Dolocan A, Stenderup J, Velazquez AMV, Cahill J, Rasmussen M, Wang X, Min J, Zazula GD, Seguin-Orlando A, Mortensen C, Magnussen K, Thompson JF, Weinstock J, Gregersen K, Røed KH, Eisenmann V, Rubin CJ, Miller DC, Antczak DF, Bertelsen MF, Brunak S, Al-Rasheid KAS, Ryder O, Andersson L, Mundy J, Krogh A, Gilbert MTP, Kjær KH, Sicheritz-Ponten T, Juhl Jensen L, Olsen JV, Hofreiter M, Nielsen R, Shapiro B, Jun W, Willerslev E: Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse. Nature(2013)   DOI:doi:10.1038/nature12323

Orlando L. 2013. Decoding genomes of the past. Biofutur 349:28-30

Ottoni C, Flink LG, Evin A, Geörg C, Cupere BD, Neer WV, Bartosiewicz L, Linderholm A, Barnett R, Peters J, Decorte R, Waelkens M, Vanderheyden N, Ricaut FX, Hoelzel AR, Mashkour M, Karimlu AFM, Seno SS, Daujat J, Brock F, Pinhasi R, Hongo H, Perez-Enciso M, Rasmussen M, Frantz L, Megens HJ, Crooijmans R, Groenen M, Arbuckle B, Benecke N, Vidarsdottir US, Burger J, Cucchi T, Dobney K, and Larson G. Pig domestication and human-mediated dispersal in western Eurasia revealed through ancient DNA and geometric morphometrics. Mol Biol Evol (2013) 30 (4): 824-832. doi:10.1093/molbev/mss261

Overballe-Petersen S, Harms K, Orlando L, Mayar JVM, Rasmussen S, Dahl TW, Rosing MT, Poole AM, Sicheritz-Ponten T, Brunak S, Inselmann S, de Vries J, Wackernagel W, Pybus OG, Nielsen R, Johnsen PJ, Nielsen KM, Willerslev E. Bacterial natural transformation by highly fragmented and damaged DNA. PNAS 2013 ; published ahead of print November 18, 2013, doi:10.1073/pnas.1315278110

Parducci L, Matetovici I, Fontana SL, Bennett KD, Suyama Y, Haile J, Kjær KH, Larsen NK, Drouzas AD, Willerslev E. Molecular and pollen-based vegetation analysis in lake sediments from central Scandinavia. Molecular Ecology. Volume 22, Issue 13, July 2013, Pages: 3511–3524. DOI: 10.1111/mec.12298

Pedersen JS, Valen E, AMV Velazquez, Parker BJ, Rasmussen M, Lindgreen S, Lilje B, Tobin DJ, Kelly TK, Vang S, Andersson R, Jones PA, Hoover CA, Tikhonov A, Prokhortchouk E, Rubin EM, Sandelin A, Gilbert MTP, Krogh A, Willerslev E, Orlando L. Genome-wide Nucleosome Map and Cytosine Methylation Levels of an Ancient Human Genome. Genome Res. published online December 3, 2013.Til toppen

Pedersen MW, Ginolhac A, Orlando L, Olsen J, Andersen K, Holm J, Funder S, Willerslev E, Kjær KH. A comparative study of ancient environmental DNA to pollen and macrofossils from lake sediments reveals taxonomic overlap and additional plant taxa. Quaternary Science Reviews, 2013 vol. 75 pp. 161-168.

Raghavan M, Skoglund P, Kelly E. Graf, Metspalu M, Albrechtsen A, Moltke I, Rasmussen S, Stafford Jr TW, Orlando L, Metspalu E, Karmin M, Tambets K, Rootsi S, Mägi R, Campos PF, Balanovska E, Balanovsky O, Khusnutdinova E, Litvinov S, Osipova LP, Fedorova SA, Voevoda MI, DeGiorgio M, Sicheritz-Ponten T, Brunak S, Demeshchenko S, Kivisild T,  Villems R, Nielsen R, Jakobsson M, Willerslev E. Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans. Nature, 20. November 2013; doi:10.1038/nature12736

Rasmussen SH, Jacobsen A and Krogh A. cWords – systematic microRNA regulatory motif discovery from mRNA expression data. Silence, 4(1):2, 2013. (PR)

Rehfeld A, Plass M, Krogh A and Friis-Hansen L. Alterations in polyadenylation and its implications for endocrine disease. Front. Endocrinol., 4:53, 2013. (PR)

Sánchez N, Rho HS, Min W, Kim D & Sørensen MV (2013). Four new species of Pycnophyes (Kinorhyncha: Homalorhagida) from Korea and the East China Sea. Scientia Marina 77: 353-380.

Schroeder H, Haviser JB, Price TD. The Zoutsteeg Three: Three new cases of African types of dental modification from Saint Martin, Dutch Caribbean. Int. J. Osteoarch. Article first published online: 29 JUN 2012. DOI: 10.1002/oa.2253

Schroeder H, Shuler KA, Chenery S. Childhood lead exposure in an enslaved African community in Barbados: Implications for Birthplace and Health Status. Am. J. Phys. Anth. 150(2): 203-209 (2013). DOI: 10.1002/ajpa.22193

Schwarcz HP, Stafford T, Knyf M, Chisholm B and Owsley D. Stable isotope evidence for diet and geographic origin of Kennewick Man. Chapter submission for Scientific Studies of the Kennewick Man Skeleton, Douglas Owsley and Richard Jantz, (Eds.) Texas A&M Press, College Station.

Seguin-Orlando A, Schubert M, Clary J, Stagegaard J, Alberdi MT, et al. Ligation Bias in Illumina Next-Generation DNA Libraries: Implications for Sequencing Ancient Genomes. PLoS ONE 8(10): e78575. doi:10.1371/journal.pone.0078575

Shapiro MD, Kronenberg Z, Cai L, Domyan ET, Pan H, Campbell M, Tan H, Huff CD, Hu H, Vickrey AI, Nielsen SCA, Stringham SA, Hu H, Willerslev E, Gilbert MTP, Yandell M, Zhang G, Wang J. Genomic diversity and evolution of the head crest in the rock pigeon. Science, 31. January 2013, DOI: 10.1126/science.1230422

Skotte L, Korneliussen TS, Albrechtsen A. Estimating Individual Admixture Proportions from Next Generation Sequencing Data. Genetics. 2013 Sept. 11

Stadthagen G, Tehler D, Høyland-Kroghsbo NM, Wen J, Krogh A, Jensen KT, Santoni-Rugiu E, Engelholm LH and Lund AH. Loss of miR-10a activates lpo and collaborates with activated Wnt signaling in inducing intestinal neoplasia in female mice. PLoS Genetics, 9(10):e1003913, Oct 2013. (PR)

Stafford Jr. TW. AMS Radiocarbon Dating of the Kennewick Skeleton, Washington. Chapter submission for Scientific Studies of the Kennewick Man Skeleton, Douglas Owsley and Richard Jantz, (Eds.) Texas A&M Press, College Station.

Sørensen MV (2013). Phylum Kinorhyncha. Zootaxa 3703: 63-66.

Sørensen MV, Rho HS, Min W, Kim D & Chang CY (2013). Occurrence of the newly described kinorhynch genus Meristoderes (Cyclorhagida: Echinoderidae) in Korea, with the description of four new species. Helgoland Marine Research 67: 291-319.

Thomsen VG, Rho HS, Kim D & Sørensen MV (2013). A new species of Dracoderes (Kinorhyncha: Dracoderidae) from Korea provides further support for a dracoderid-homalorhagid relationship. Zootaxa 3682: 133-142.

Vilstrup JT, Seguin-Orlando A, Stiller M, Ginolhac A, Raghavan M, et al. (2013). Mitochondrial Phylogenomics of Modern and Ancient Equids. PLoS ONE 8(2): e55950. doi:10.1371/journal.pone.0055950

Wales N, Allaby R, Willerslev E. and Gilbert MTP. Ancient Plant DNA. In: Elias SA. (ed.) The Encyclopedia of Quaternary Science, vol. 2, pp. 705-715. Amsterdam: Elsevier. (2013)

Waters M and Stafford T. The First Americans: A Review of the Evidence for the Late-Pleistocene Peopling of the Americas. Paleoamerican Odyssey, pp 487-506

Wiley AE, Ostroma PH, Welch AJ, Fleischer RC, Gandhia H, Southon JR, Stafford Jr. TW, Penniman JF, Hu D, Duvall FP, James HF. Millennial-scale isotope records from a wide-ranging predator show evidence of recent human impact to oceanic food webs. PNAS May 28, 2013 vol. 110 no. 22. doi: 10.1073/pnas.1300213110

Winkelmann I, Campos PF, Strugnell J, Cherel Y, Smith PJ, Kubodera T, Allcock L, Kampmann M-L, Schroeder H, Guerra A, Norman M, Finn J, Ingrao D, Clarke M, Gilbert MTP. Mitochondrial genome diversity and population structure of the giant squid Architeuthis: genetics sheds new light on one of the most enigmatic marine species. Proc. R. Soc. B 22 May 2013 vol. 280 no. 1759 20130273. Published 20 March 2013 doi: 10.1098/rspb.2013.0273

Winther Pedersen M, Ginolhac A, Orlando L, Olsen J, Andersen K, Holm J, Funder S, Willerslev E, Kjær KH (2013). A comparative study of ancient environmental DNA to pollen and macrofossils from lake sediments reveals taxonomic overlap and additional plant taxa. Quaternary Science Rev 75, 161-168

Zhang H, Paijmans JL, Chang F, Wu X, Chen G, Lei C, Yang X, Wei Z, Bradley DG, Orlando L, O'Connor T, Hofreiter M. Morphological and genetic evidence for early Holocene cattle management in northeastern China. Nature Communications  4, Article number: 2755 doi:10.1038/ncomms3755. Published 08 November 2013.

Publications 2012Til toppen

Abel Nielsen SC, Mourier T, Baandrup U, Mangart Søland T, Bertelsen MF, Gilbert MTP, Nielsen LP. Probable Transmission of Coxsackie B3 Virus from Human to Chimpanzee, Denmark. Emerging Infectious Diseases, Volume 18, Number 7 - July 2012

Allentoft ME, Collins M, Harker D, Haile J, Oskam CL, Hale ML, Campos PF, Samaniego JA, Gilbert MTP, Willerslev E, Zhang G, Scofield RP, Holdaway RN, Bunce M. The half-life of DNA in bone: measuring decay kinetics in 158 dated fossils. Proc. Royal Soc. B 2012 279, 4724-4733, (2012). doi: 10.1098/rspb.2012.1745

Andersen K, Bird KL, Rasmussen M, Haile J, Breuning-Madsen H, Kjær KH, Orlando L, Gilbert MTP, Willerslev E. Meta-barcoding of ‘dirt' DNA from soil reflects vertebrate biodiversity. Mol. Ecol. 21:1966-1979, (2012)

Andresen CS, Straneo F, Ribergaard MH, Bjørk AA, Andersen TJ, Kuijpers A, Nørgaard-Petersen N, Kjær KH, Schjøt F, Weckström K, Ahlstrøm AP. Rapid response of Helheim Glacier in Greenland to climate variability over the past century. Nature Geoscience, vol. 5, pp. 37-41, (2012)

Beck S, Kuningas S, Esteban-Pavo R, Foote AD. The influence of ecology on sociality in the killer whale (Orcinus orca). Behavioral Ecology, 23: 246-253, (2012)

Bengtsson CF, Olsen ME, Brandt LØ, Bertelsen MF, Willerslev E, Tobin DJ, Wilson AS, Gilbert MTP. DNA from keratinous tissue, part I: Hair and nail. Ann Anat 194: 17-25, (2012)

Biagini P, Thèves C, Balaresque P, Géraut A, Cannet C, Keyser C, Nikolaeva D, Gérard P, Duchesne S, Orlando L, Willerslev E, Alekseev AN, de Micco P, Ludes B, Crubézy E. Variola virus in a 300-year-old Siberian mummy. N. Engl. J. Med. 2012 Nov 22;367(21):2057-9. doi: 10.1056/NEJMc1208124

Bjørk AA. Arkivfotos udvider klimaforskernes horisont. Tidsskriftet Grønland, 03/2012, pp. 174-180

Bjørk AA, Kjær KH, Korsgaard NJ, Khan SA, Kjeldsen KK, Andresen CS, Box JE, Larsen NK, Funder S. An aerial view of 80 years of climate-related glacier fluctuations in Southeast Greenland. Nature Geoscience, June 2012 Vol 5 No 6- DOI: 10.1038/NGEO1481 (PR)(CO)

Boessenkool S, Epp LS, Haile J. Bellemain E, Edwards M, Coissac E, Willerslev E, Brochmann C. Blocking human contaminant DNA during PCR allows amplification of rare mammal species in sedimentary ancient DNA. Mol. Ecol. 21, 1806–1815, (2012)

Bray SCE, Austin JJ, Metcalf JL, Østbye K, Østbye E, Lauritzen S-E, Aaris-Sørensen K, Valdiosera C, Adler CJ, Cooper A. Ancient DNA identifies post-glacial recolonisation, not recent bottlenecks, as the primary driver of contemporary mtDNA phylogeography and diversity in Scandinavian brown bears. Diversity and Distributions 2012:1-12

Brüniche-Olsen A, Gravlund P, Lorenzen ED. Impact of genetic drift and restricted gene flow in indigenous cattle breeds: evidence from the Jutland breed. Animal Genetic Resources/Ressources génétiques animales/Recursos genéticos animales, 50, pp.75–85, June 2012Til toppen

Campos PF, Craig OE, Turner-Walker G, Peacock E, Willerslev E, Gilbert MTP. DNA in ancient bone – where is it located and how should we extract it? Ann. Anat. 194: 7-16, (2012)

Campos PF, Gilbert MTP. DNA extraction from formalin-fixed material. In: Shapiro B, Hofreiter M (eds.). Methods in Molecular Biology: Ancient DNA. Springer (2012)

Campos PF, Gilbert MTP. DNA extraction from keratin and chitin. In: Shapiro B, Hofreiter M (eds.) Methods in Molecular Biology: Ancient DNA. Springer (2012)

Cappellini E, Jensen L, Szklarczyk D, Ginolhac A, da Fonseca R, Stafford T, Holven S, Collins M, Orlando L, Willerslev E, Gilbert MTP, Olsen JV. Proteomic analysis of a Pleistocene mammoth femur reveals more than one hundred ancient bone proteins. J. Proteome Res. 11: 917-926, (2012)

Crone SG, Jacobsen A, Federspiel B, Bardram L, Krogh A, Lund AH, Friis- Hansen L. microRNA-146a inhibits G protein-coupled receptor-mediated activation of NF-kappaB by targeting CARD10 and COPS8 in gastric cancer. Mol. cancer, 11(1):71, Sep 2012

Dalén L, Orlando L, Shapiro B, Brandström Durling M, Quam R, Gilbert MTP, Fernández-Lomana JCD, Willerslev E, Arsuaga JL, Götherström A. Partial genetic turnover in neandertals: continuity in the east and population replacement in the west. Mol. Biol. Evol. 29:1893-1897, (2012)

Duchene S, Frey A, Alfaro-Núñez A, Dutton PH, Gilbert MTP, Morin PA. Marine turtle mitogenome phylogenetics and evolution. Mol. Phyl. Evol. Volume 65, Issue 1, October 2012, Pages 241-250

Epp LS, Boessenkool S, Bellemain EP, Haile J, Esposito A, Riaz T, Erséus C, Gusarov VI, Edwards ME, Johnsen A, Stenøien HK, Hassel K, Kauserud H, Yoccoz NG, Bråthen KA, Willerslev E, Taberlet P, Coissac E, Brochmann C. New environmental metabarcodes for analysing soil DNA: potential for studying past and present ecosystems. Mol. Ecol. Volume 21, Issue 8, April 2012, Pages: 1821–1833, Article first published online : 10 Apr 2012, DOI: 10.1111/j.1365-294X.2012.05537.x

Foote AD. Investigating ecological speciation in non-model organisms: a case study on killer whale ecotypes. Evolutionary Ecology Research 14, 447-465, 2012

Foote AD, Hofreiter M, Morin PA. Ancient DNA and marine mammals: Studying long lived species over ecological and evolutionary timescales. Ann. Anat. 194: 112-120, (2012)

Foote AD, Thomsen PF, Sveegaard S, Wahlberg M, Kielgast J, Kyhn LA, Salling AB, Galatius A, Orlando L, Gilbert MTP. Investigating the Potential Use of Environmental DNA (eDNA) for Genetic Monitoring of Marine Mammals. PLoS ONE, 2012 vol:7 hft.:8 s.:e41781

Foote AD, Vester H, Vikingsson GA, Newton J. Dietary variation within and between populations of northeast Atlantic killer whales Orcinus orca inferred from d13C and d15N analyses. Marine Mammal Science, Volume 28, Issue 4, pages E472–E485, October 2012

Ginolhac A, Vilstrup J, Stenderup J, Rasmussen M, Stiller M, Shapiro B, Zazula G, Froese D, Steinmann KE, Thompson JF, Al-Rasheid KA, Gilbert TM, Willerslev E, Orlando L. Improving the performance of True Single Molecule Sequencing for ancient DNA. BMC Genomics. 2012 May 10;13(1):177

Gotfredsen AB. Book review: Prummel, W., Zeiler, J.T., & Brinkhuizen, D.C. (eds.) 2010. Birds in Archaeology. Proceedings of the 6th Meeting of the ICAZ Bird Working Group in Groningen (23.8 - 27.8 2008). Groningen Archaeological Studies. Volume 12. Barkhuis. Groningen, 284 p., ISBN 978-90-77922-77-4, price: 50 EURO. Praehistorische Zeitschrift 87 (1): 216-221. De Gruyter. Berlin. DOI 10.1515/pz-2012-2013. (2012)

Gotfredsen AB, Møbjerg T. Urokser og bævere fra Midtjylland - nye dateringer af gamle fund. Museum Midtjylland, Midtjyske Fortællinger. 2012: 59-70. (2012)

Gravlund, P, Aaris-Sørensen K, Hofreiter M, Meyer M, Bolbach J, Noe-Nygård N. Ancient DNA extracted from Danish aurochs (Bos primigenius): Genetic diversity and preservation. Ann. Anat. 194 (1):103-111, (2012)

Gregersen LH, Jacobsen A, Frankel LB, Wen J, Krogh A, Lund AH. MicroRNA-143 down-regulates Hexokinase 2 in colon cancer cells. BMC Cancer 12:232, 2012

Hansen KL. E Museo Lundii - Addendum. 26 jun 2012 1. edition udg. Danmark: Statens Naturhistoriske Museum. 104 s. ISBN: 978-87-87519-75-5. 2012

Houmark-Nielsen M, Linge H, Fabel D, Schnabel C, Xu S, Wilcken KM, Binnie S. Cosmogenic surface exposure dating the last deglaciation in Denmark: discrepancies with independent age constraints suggest delayed periglacial landform stabilization. Quaternary Geochronology 13, 1-17, 2012. doi: 10.1016/j.quageo.2012.08.006Til toppen

Jacobsen MW, Hansen MM, Orlando L, Bekkevold D, Willerslev E, Bernatchez L, Gilbert MTP. Mitogenome sequencing reveals shallow evolutionary histories and recent divergence time between morphologically and ecologically distinct European whitefish (Coregonus spp.). Mol. Ecol. 21:2727-2742, (2012)

Jenkins DL, Davis LG, Stafford Jr TW, Campos PF, Hockett B, Jones GT, Cummings LS, Yost C, Connolly TJ, Yohe II RM, Gibbons SC, Raghavan M, Rasmussen M, Paijmans JLA, Hofreiter M, Kemp BM, Barta JL, Monroe C, Gilbert MTP, Willerslev E. Clovis Age Western Stemmed Projectile Points and Human Coprolites at the Paisley Caves. Science 13 July 2012: Vol. 337 no. 6091 pp. 223-228 DOI:10.1126/science.1218443

Jones EP, Skirnisson K, McGovern TH, Gilbert MTP, Willerslev E, Searle JB. Fellow travellers: a concordance of colonization patterns between mice and men in the North Atlantic region. BMC Evol. Biol. 12, 35. (2012)

Jørgensen T, Haile J, Möller P, Andreev A, Boessenkool S, Rasmussen M, Kielast F, Coissac E, Taberlet P, Brochmann C, Bigelow N, Andersen K, Orlando L, Gilbert MTP, Willerslev E. A comparative study of ancient sedimentary DNA, pollen and macrofossils from permafrost sediments of Northern Siberia reveals long-term vegetational stability. Mol. Ecol. 21:1989-2003, (2012). doi: 10.1111/j.1365-294X.2011.05278.x

Jørgensen T, Kjær K, Haile J, Rasmussen M, Boessenkool S, Andersen K, Coissac E, Taberlet P, Brochmann C, Orlando L, Gilbert MTP, Willerslev E. Islands in the Ice: detecting past vegetation on Greenlandic Nunataks using historical records and sedimentary ancient DNA meta-barcoding. Mol. Ecol. 21:1980-1988, (2012)

Kjær KH, Khan SA, Korsgaard NJ, Wahr J, Bamber JL, Hurkmans R, van den Broeke M, Timm LH, Kjeldsen KK, Bjørk AA, Larsen NK, Jørgensen LT, Færch-Jensen A, Willerslev A. Aerial Photographs Reveal Late–20th-Century Dynamic Ice Loss in Northwestern Greenland. Science 3 August 2012: Vol. 337 no. 6094 pp. 569-573 DOI: 10.1126/science.1220614

Lavstsen T, Turner L, Saguti F, Magistrado P, Rask TS, Jespersen JS, Wang CW, Berger SS, Baraka V, Marquard AM, Seguin-Orlando A, Willerslev E, Gilbert MTP, Lusingu J, Theander TG. Plasmodium falciparum erythrocyte membrane protein 1 domain cassettes 8 and 13 are associated with severe malaria in children. Proc. Natl. Acad. Sci. USA 109:10160-10161

Lorenzen ED, Heller R, Siegismund HR. Comparative phylogeography of African savannah ungulates. Mol. Ecol. 15. June 2012, DOI: 10.1111/j.1365-294X.2012.05650.xTil toppen

Malaspinas AS, Malaspinas O, Evans SN, Slatkin M. Estimating allele age and selection coefficient from time-serial data. GENETICS October 1. 2012 vol. 192 no. 2, 599-607

Malmström H, Vretemark M, Tillmar A, Brandström Durling M, Skoglund P, Gilbert MTP, Willerslev E, Holmlund G, Götherström A. Finding the founder of Stockholm – a kinship study based on Y-chromosomal, autosomal and mitochondrial DNA. Ann. Anat. 194:138-145. (2012)

MacFadden BJ, Barbara A, Purdy, Church K, Stafford Jr TW. Humans were contemporaneous with late Pleistocene mammals in Florida: evidence from rare earth elemental analysis. Journal of Vertebrate Paleontology: 32, 708-716. (2012)

Mourier T, Ho SYW, Gilbert MTP, Willerslev E, Orlando L. Statistical guidelines for detecting past population shifts using ancient DNA. Molecular Biology Evolution 29:2241-2251, (2012)

Murray DC, Pearson SG, Fullagar R, Chase BM, Houston J, Atchison J, White NE, Bellgard MI, Clarke E, Macphail M, Gilbert MTP, Haile J, Bunce M. High-throughput sequencing of ancient plant and mammal DNA preserved in herbivore middens. Quat. Sci. Rev. 58:135-145, (2012)

Nielsen K, Khan SA, Korsgaard NJ, Kjær KH, Wahr J, Bevis M, Stearns LA, Timm LH. Crustal uplift due to ice mass variability on Upernavik Isstrøm, West Greenland. Earth and Planetary Science Letters , vol 353-354, pp. 182-189, (2012)

Noer CL, Dabelsteen T, Bohmann K, Monadjem A. Molossid bats in an African agro-ecosystem select sugarcane fields as foraging habitat. African Zoology 47(1): 1–11(April 2012)

Odumosu, T. Default Positions: African Icons and stereotypes from Georgian print culture. The Ephemerist 158 (Autumn), 10-13

Odumosu T. Abolitionists, African Diplomats and ‘the Black Joke’ in George Cruikshank’s 'New Union Club'. In McGrath, Elizabeth and Jean Michel Massing, eds. The Slave in European Art: From Renaissance Trophy to Abolitionist Emblem. Warburg Institute Colloquia. Vol. 20. (2012). London; Turin: Warburg Institute; Nino Aragno, 333-359. ISBN 978-1-908590-43-5

Olsen J, Kjær KH, Funder S, Larsen NK & Ludikova A, 2012. High-Arctic climate conditions for the last 7,000 years inferred from multi-proxy analysis of the Bliss Lake record, Northern Greenland. Journal of Quaternary Science DOI: 10.1002/jqs.1548 (PR)(CO)

Oonk S, Cappellini E, Collins MC. Soil proteomics: An assessment of its potential for archaeological site interpretation. Organic Geochemistry, Organic Geochemistry, Vol. 50, September 2012, Pp. 57-67

Oskam CL, Allentoft ME, Walter R, Scofield RP, Haile J, Holdaway RN, Bunce M, Jacomb C. Ancient DNA analyses of early archaeological sites in New Zealand reveal extreme exploitation of moa (Aves: Dinornithiformes) at all life stages. Quat. Sci. Rev. 52 (2012) 41e48

Overballe-Petersen S, Orlando L, Willerslev E. Next-generation sequencing offers new insights into DNA degradation. Trends in Biotechnology. 1 July 2012, Vol. 30, Issue 7, pp. 364-368

Paijmans JLA, Gilbert MTP, Hofreiter M. Mitogenomic analyses from ancient DNA. Mol. Phyl. Evol. 22:1494-1499, (2012)

Parducci L, Jørgensen T, Tollefsrud MM, Elverland E, Alm T, Fontana SL, Bennett KD, Haile J, Matetovici I, Suyama Y, Edwards ME, Andersen K, Rasmussen M, Boessenkool S, Coissac E, Brochmann C, Taberlet P, Houmark-Nielsen M, Larsen NK, Orlando L, Gilbert MTP, Kjær KH, Alsos I.G, Willerslev E. Glacial Survival of Boreal Trees in Northern Scandinavia. Science. 2 March 2012: 1083-1086. Supporting online material: 1-16. [DOI:10.1126/science.1216043

Parducci L, Edwards ME, Bennett KD, Alm T, Elverland E, Tollefsrud MM, Jørgensen T, Houmark-Nielsen M, Larsen NK, Kjær KH, Fontana SL, Alsos IG, Willerslev E. Response to Comment on ‘Glacial survival of boreal trees in northern Scandinavia’. Science. 338, 742-743, (2012)

Perren BP, Wolfe AP, Cooke CA, Kjær KH, Mazzucchi D, Steig EJ. Twentieth-century warming revives the world's northernmost lake. Geology. Published online on 18 September 2012 as doi:10.1130/G33621.1

Philip S, Castro LF, da Fonseca RR, Reis-Henriques MA, Vasconcelos V, Santos MM, Antunes A. Adaptive evolution of the Retinoid X receptor in vertebrates. Genomics. 2012 Feb; 99(2):81-9

Reid AJ, Vermont SJ, Cotton JA, Harris D, Hill-Cawthorne GA, Könen-Waisman S, Latham S, Mourier T, Norton R, Quail M, Sanders M, Shanmugam D, Sohal A, Wasmuth J, Brunk B, Grigg M, Howard JC, Parkinson J, Roos D, Trees AJ, Berriman M, Pain A, Wastling JM. Comparative genomics of the apicomplexan parasites Toxoplasma gondii and Neospora caninum: Coccidia differing in host range and transmission strategy. PLoS Pathogens. 22. March 2012Til toppen

Sánchez-Quinto F, Schroeder H, Ramirez O, Ávila-Arcos MC, Pybus M, Olalde I, Velazquez AMV, Marcos MEP, Encinas JMV, Bertranpetit J, Orlando L, Gilbert MTP, Lalueza-Fox C. Genomic Affinities of Two 7,000-Year-Old Iberian Hunter-Gatherers. Curr. Biol. 21 August 2012 Vol. 22 Issue 16

Sánchez-Quinto F, Botiguá LR, Civit S, Arenas C, Ávila-Arcos MC et al. North African Populations Carry the Signature of Admixture with Neandertals. PLoS ONE 7(10): e47765. (2012). doi:10.1371/journal.pone.0047765

Schnell IB, Thomsen PF, Wilkinson N, Rasmussen M, Jensen LRD, Willerslev E, Bertelsen MF, Gilbert MTP. Terrestrial mammal biodiversity screening using DNA from Haematophagous leeches. Curr. Biol. 22: R262-263, (2012)

Schomacker A, Benediktsson ÍÖ, Ingólfsson Ó, Friis B, Korsgaard NJ, Kjær KH, Keiding JK. Late Holocene and modern glacier changes in the marginal zone of Sólheimajökull, South Iceland. Jokull, vol 62, pp. 111-130 (2012)

Schubert M, Ginolhac A, Lindgreen S, Thompson JF, Al-Rasheid KA, Willerslev E, Krogh A, Orlando L. Improving ancient DNA read mapping against modern reference genomes. BMC Genomics. 2012 May 10;13(1):178

Sinding MHS. 4.500 års grønlandshvaler vejer under et gram. Tidsskriftet Grønland, 03/2012, pp. 191-197

Sinding MHS, Gilbert MTP, Grønnow B, Gulløv HC, Toft PA, Foote AD. Minimally destructive DNA extraction from archaeological artefacts made from whale baleen. Journal of Archaeological Science, Vol. 39, Issue 12, December 2012, Pages 3750-3753.

Skoglund P, Malmström H, Raghavan M, Storå J, Hall P, Willerslev E, Gilbert MTP, Götherström A, Jakobsson M. Origins and genetic legacy of Neolithic farmers and hunter-gatherers in Europe. Science 336:466-469, (2012)

Taberlet P, Coissac E, Brochmann C… E. Willerslev. New environmental metabarcodes for analysing soil DNA: potential for studying past and present ecosystems. Mol. Ecol. 21(8): 1821-33, (2012)

Taberlet P, Coissac E, Pompanon F, Brochmann C, Willerslev E. Towards next-generation biodiversity assessment using DNA metabarcoding. Mol. Ecol. Volume 21, Issue 8, Pages: 2045–2050, Article first published online : 10 APR 2012, DOI: 10.1111/j.1365-294X.2012.05470.x

Thomsen PF, Kielgast J, Iversen LL, Møller PR, Rasmussen M, Willerslev E. Detection of a Diverse Marine Fish Fauna Using Environmental DNA from Seawater Samples. PLoS One, 29. August 2012

Thomsen PF, Kielgast J, Iversen LL, Wiuf C, Rasmussen M, Gilbert MTP, Orlando L, Willerslev E. Monitoring endangered freshwater biodiversity using environmental DNA. Mol. Ecol. 21:2565-2573, (2012)

Tsangaras K, Avila-Arcos MC, Ishida Y, Helgen KM, Roca AL, Greenwood AD. Historically low mitochondrial DNA diversity in koalas (Phascolarctos cinereus). BMC Genetics, Oct. 24; 13:92

Wales N, Romero-Navarro JA, Cappellini E, Gilbert MTP. Choosing the best plant for the job: a cost-effective assay to prescreen plant remains destined for shotgun sequencing. PLoS ONE 20 September 2012

Wang SY, Cappellini E, Zhang HY. Why collagens best survived in fossils? Clues from amino acid thermal stability. Biochemical & Biophysical Research Communications, 422, 5-7, (2012)

Yang MA, Malaspinas AS, Durand EY, Slatkin M. Ancient structure in Africa unlikely to explain neanderthal and non-african genetic similarity. Mol. Biol. Evol. 2012 Oct;29(10):2987-95. Epub 2012 Apr 18

Yoccoz NG, Bråthen NG, Gielly L, Haile J, Edwards ME, Goslar T, von Stedingk H, Brysting AK, Coissac E, Pompanon F, Sønstebø JH, Miquel C, Valentini A, de Bello F, Chave J, Thuiller W, Wincker P, Cruaud C, Gavory F, Rasmussen M, Gilbert MTP, Orlando L, Brochmann C, Willerslev E, Taberlet P. DNA from soil mirrors plant functional and structural diversity. Mol. Ecol. 21:3647-3655, (2012)

Weischenfeldt J, Waage J, Tian G, Zhao J, Damgaard I, Jakobsen JS, Kristiansen K, Krogh A, Wang J, Porse BT. Mammalian tissues defective in nonsense-mediated mRNA decay display highly aberrant splicing patterns. Genome Biology, 13(5):R35, 2012 

Publications 2011Til toppen

Allentoft ME, Oskam C, Houston J, Hale ML, Gilbert MTP, Rasmussen M, Spencer P, Jacomb C, Willerslev E, Holdaway RN, Bunce M. Profiling the dead: Generating microsatellite data from fossil bones of extinct megafauna - protocols, problems and prospects. PLoS ONE 6:e16670, (2011)

Arnold L, Roberts RG, MacPhee RDE, Haile JS, Brock F, Möller P, Froese DG, Tikhonov AN, Chivas AR, Gilbert MTP, Willerslev E. Dirt, dates and DNA: OSL and radiocarbon chronologies of perennially-frozen sediments in Siberia, and their implications for sedimentary ancient DNA studies. Boreas 40:417-445, (2011)

Arppe L, Aaris-Sørensen K, Daugnora L, Lõugas L, Wojtal P, Zupins I. The palaeoenvironmental delta13C record in European woolly mammoth. Quaternary International 245:285-290, (2011)

Ávila-Arcos MC, Cappellini E, Romero-Navarro JA, Wales N, Moreno-Mayar JV, Rasmussen M, Fordyce SL, Montiel R, Vielle-Calzada J-P, Willerslev E, Gilbert MTP. Application and comparison of large-scale solution-based DNA capture-enrichment methods on ancient DNA. Scientific Reports 1:74, (2011)

Baret F, Bringer F, Busti D, Carpentier A, Caudron N, Charrier C, Celle F, Daoust G, Froissart H, Geray L, Jalabert S, Mauffrey A, Olive C, Picoche J-M, Rebulard S, Salomon L, Seguin-Orlando A, Seyed R, Thébault P-O, Vigier S, Woerle A. SVT 1re S. (Editor: Belin ). A French textbook for before-last year of high-school (scientific sections) on natural and earth sciences, 335 pages, April 2011

Barrett JH, Orton D, Johnstone C, Harland J, Van Neer W, Ervynck A, Roberts C, Locker A, Amundsen C, Enghoff IB, Hamilton-Dyer S, Heinrich D, Hufthammer A, Jones A, Jonsson L, Makowiecki D, Pope P, O'Connell T, de Roo T, Richards M. Interpreting the expansion of sea fishing in Medieval Europe using stable isotope analysis of archaeological cod bones. Journal of Archaeological Science 36: 1516-1524. (2011)

Bjørk AA, Björck S, Cronholm A, Haile J, Ljung K, Porter C. Possible Late Pleistocene volcanic activity on Nightingale Island, South Atlantic Ocean, based on geoelectrical resistivity measurements, sediment corings and 14C dating. GFF, vol. 133, Issue 3-4, pp. 141-147, (2011)

Bohmann K, Monadjem A, Noer C, Rasmussen M, Zeale M, Clare E, Jones G, Willerslev E, Gilbert MTP. Molecular diet analysis of two African free-tailed bats (Molossidae) using high throughput sequencing. PLoS ONE 6:e21441, (2011)

Bou Kheir T, Futoma-Kazmierczak A, Jacobsen A, Krogh A, Bardram L, Hother C, Grønbæk K, Federspiel B, Lund AH, Friis-Hansen L. miR-449 inhibits cell proliferation and is down-regulated in gastric cancer. Mol. cancer, 10:29, 2011

Brandt LØ, Tranekjer LD, Mannering U, Ringgaard M, Frei KM, Willerslev E, Gleba M, Gilbert MTP. Characterising the potential of sheep wool for ancient DNA analyses. Arch. Anth. Sci. 3:209-221, (2011)

Bruhn CAW, Gilbert MTP. HIV-2 down, HIV-1 to go? - Understanding the possibilities of treatment as prevention. Lancet Infectious Diseases 11:260-261, (2011)

Cheung C, Schroeder H, Hedges REM. Diet, social differentiation and cultural change in Roman Britain: new isotopic evidence from Gloucestershire. Arch. Anth. Sci. 4(1), 61–73. doi:10.1007/s12520-011-0083-y, (2011)

Deecke VB, Nykänen M, Foote AD, Janik VM. Vocal behavior and feeding ecology of killer whales (Orcinus orca) around Shetland, UK. Aquatic Biology 13:79-88, (2011)

Duchene S, Archer FI, Vilstrup J, Caballero S, and Morin PA. Mitogenome phylogenetics: The impact of using single regions and partitioning schemes on topology, substitution rate and divergence time estimation. PLoS ONE 6(11): e27138, (2011)

Edwards CJ, Suchard MA, Lemey P, Welch JJ, Barnes I, Fulton TL, Barnett R, O'Connell TC, Coxon P, Monaghan N, Valdiosera CE, Lorenzen ED, Willerslev E, Baryshnikov GF, Rambaut A, Thomas MG, Bradley DG, Shapiro B. Multiple hybridizations between ancient brown and polar bears and an Irish origin for the modern polar bear matriline. Curr. Biol. 21, 1251-1258, (2011)

Enghoff IB. Regionality and biotope exploitation in Danish Ertebølle and adjoining periods. Scientia Danica. Series B, Biologica 1: 1-394. (2011)

Foote AD, Morin PA, Durban JW, Willerslev E, Orlando L, Gilbert MTP. Out of the Pacific and back again: insights into the matrilineal history of Pacific killer whale ecotypes. PLoS ONE 6:e24980, (2011)

Foote AD, Morin PA, Durban JW, Pitman RL, Wade P, Willerslev E, Gilbert MTP, da Fonseca RR. Positive selection on the killer whale mitogenome. Biology Letters 1:116-118, (2011)

Foote AD, Vilstrup JT, de Stephanis R, Verborgh P, Abel Nielsen SC, Deaville R, Kleivane L, Martin V, Miller PJO, Øien N, Perez-Gil M, Rasmussen M, Reid RJ, Robertson KM, Rogan E, Simla T, Tejedor ML, Vester H, Vikingsson GA, Willerslev E, Gilbert MTP, Piertney SB. Genetic differentiation among North Atlantic killer whale populations. Mol. Ecol. 20:629-641, (2011)

Fordyce SL, Avila-Arcos MC, Rockenbauer E, Børsting C, Frank-Hansen R, Torp Petersen F, Willerslev E, Hansen AJ, Morling N, Gilbert MTP. High-throughput sequencing of core STR loci for forensic genetic investigation using the Roche Genome Sequencer FLX platform. Biotechniques 51:127-133, (2011)

Frankel LB, Wen J, Lees M, Høyer-Hansen M, Farkas T, Krogh A, Ja ̈a ̈ttela M, Lund AH. microRNA-101 is a potent inhibitor of autophagy. EMBO Journal, 30(22):4628–4641, Nov 2011

Funder S, Gosse H, Jepsen HF, Kaas E, Kjær KH, Korsgaard NJ, Larsen NK, Linderson H, Lyså A, Möller P, Olsen J, Willerslev E. A 10,000-year record of Arctic Ocean sea ice variability - View from the beach. Science 333, 747-750 (2011) (PR)(CO)

Funder S, Kjeldsen KK, Kjær KH, Cofaigh CO. The Greenland Ice Sheet During the Past 300,000 Years: A Review. Natural History, 699-713, (2011), doi:10.1016/B978-0-444-53447-7.00050-7 (PR)(CO)

Gilbert MTP. News and Perspectives: The Mummy Returns...and sheds new light on old questions. Mol. Ecol. 20: 4195-4198, (2011)

Ginolhac A, Rasmussen M, Gilbert MTP, Willerslev E, Orlando L. mapDamage: testing for damage patterns in ancient DNA sequences. Bioinformatics 15:2153-2155, (2011)

Glykou A, Heinrich D, Enghoff IB. Bearbeitete Wirbel von Thunfischen, Thunnus thynnus (L. 1758). Frühneuzeitliche objekte unbekannter function. Offa 63/64, 2006/07 (2011):  209-215

Grønnow B, Gulløv HC, Jakobsen BH, Gotfredsen AB, Kauffmann LH, Kroon A, Pedersen JT, Sørensen M. At the Edge: High Arctic Walrus Hunters during the Little Ice Age. Antiquity 85 (329) September 2011: 960-977

Harvey DJ, Gange AC, Hawes CJ, Rink M,.......Thomsen PF,.......(48 authors total). Bionomics and distribution of the stag beetle, Lucanus cervus (L.) across Europe. Insect Conservation and Diversity 4, 23-38, (2011)

Heide-Jørgensen MP, Garde,E. Fetal growth of narwhals (Monodon monoceros). Marine Mammal Science 27:659-664, (2011)Til toppen

Houmark-Nielsen M. Pleistocene Glaciations in Denmark: A Closer Look at Chronology, Ice Dynamics and Landforms. In Ehlers J, Gibbard PL, Hughes PD (eds.). Developments in Quaternary Science, Vol. 15, 47-58, (2011)

Houmark-Nielsen M. Geologien i Odsherred, Odsherredbuerne: Et istidslandskab skabt i krydsfeltet mellem tre isstrømme. & Sites: Lavningerne i Odsherred, Nakke-Rørvig Halvøen, Vejrhøjbuen, Gniben, Klint-Ebbeløkke, Korevle og Ordrup Næs. (2011)

Kampmann ML, Fordyce SL, Avila-Arcos MC, Rasmussen M, Willerslev E, Nielsen LP, Gilbert MTP. A simple method for the parallel deep sequencing of full influenza A genomes. J. Virological Methods 178:243-248, (2011)

Lalueza-Fox C, Gilbert MTP. Paleogenomics of archaeic hominins. Curr. Biol. 21, R1002–R1009, (2011)

Lalueza-Fox C, Rosas A, Estalrrich A, Gigli E, Campos PF, Garcia-Tabernero A, Garcia-Vargas S, Sanchez-Quinto F, Ramirez O, Civit S, Bastir M, Huguet R, Santamaria D, Gilbert MTP, Willerslev E, de la Rasilla M. Genetic evidence for patrilocal mating behaviour among Neandertal groups. Proc. Natl. Acad. Sci. USA. 108:250-253, (2011)

Lalueza-Fox C, Rosas A, de la Rasilla M, Gilbert MTP, Willerslev E. Reply to Vigilant and Langergraber: Patrilocality in Neandertals is still the most plausible explanation. Proc. Natl. Acad. Sci. USA. 108, E88-E88, (2011)

Larsen N, Kjær KH, Funder S, Möller P, van der Meer JJ, Schomacker A, Linge H, & Darby DA, (2011). Late Quaternary glaciation history of northernmost Greenland - Evidence of shelf-based ice. Quaternary Science Reviews 29, 3399-3414. (PR)(CO)

Larsen NK, Kjær KH, Olsen J, Funder S, Kjeldsen KK, Nørgaard-Pedersen N. Restricted impact of Holocene climate variations on the southern Greenland Ice Sheet. Quat. Sci. Rev. 1-10, (2011). doi:10.1016/j.quascirev.2011.07.022 (PR)(CO)

Lippold S, Knapp M, Kuznetsova T, Leonard JA, Benecke N, Ludwig A, Rasmussen M, Cooper, A, Weinstock J, Willerslev E, Shapiro B. Hofreiter M. Rediscovering the lost diversity of paternal horse lineages using ancient DNA. Nature Communications, 2, 450pp. 2011

Lorenzen ED, Nogués-Bravo, Orlando L, Weinstock J, Binladen J, Marske KA, Ugan A, Borregaard MK, Gilbert MTP, Nielsen R, Ho SYW, Goebel T, Graf KE, Byers D, Stenderup JT, Rasmussen M, Campos PF, Leonard JA, Koepfli K-P, Froese D, Zazula G, Stafford Jr. TW, Aaris-Sørensen K, Batra P, Haywood AM, Singarayer JS, Valdes PJ, Boeskorov G, Burns JA, Davydov SP, Haile J, Jenkins DL, Kosintsev P, Kuznetsova T, Lai X, Martin LD, McDonald HG, Mol D, Meldgaard M, Munch K, Stephan E, Sablin M, Sommer RS, Sipko T, Scott E, Suchard MA, Tikhonov A, Willerslev R, Wayne RK, Cooper A, Hofreiter M, Sher A, Shapiro B, Rahbeck C, Willerslev E. Individualistic species responses to climate and humans determinate Late Quaternary megafaunal extinction and survival. Nature 479:359-364, (2011)

Maldonado E, Dutheil JY, da Fonseca RR, Vasconcelos V, Antunes A. IMPACT: integrated multiprogram platform for analyses in ConTest. J Hered. 2011 May-Jun;102(3):366-9. Epub 2011 Mar 16

Mourier T. Retrotransposon-Centered Analysis of piRNA Targeting Shows a Shift from Active to Passive Retrotransposon Transcription in Developing Mouse Testes. BMC Genomics 12:440, (2011)

Nygaard S, Zhang G, Schiøtt M, Li C, Wurm Y, Hu Y, Zhou J, Ji L, Qiu F, Rasmussen M, Pan H, Hauser F, Krogh A, Grimmelikhuijzen CJ, Wang J, Boomsma JJ. The genome of the leaf-cutting ant Acromyrmex echinatior suggests key adaptations to advanced social life and fungus farming. Genome Res. 21(8):1339–1348, 2011

Olmi L, Maria Mercuri AM, Gilbert MPT, Biagetti S, Fordyce S, Cappellini E, Massamba N’siala I, di Lernia S. Morphological and genetic analyses of early-mid Holocene wild cereals from the Takarkori rockshelter (central Sahara, Libya): first results and prospects. In Reports in African Archaeology; Windows on the African Past; Current approaches to African archaeobotany. Pp. 175-184. 2011. Editor: Catherine D'Andrea

Olsen ME, Bengtsson CF, Bertelsen MF, Willerslev E, Gilbert MTP. DNA from keratinous tissue, part II: Feather. Ann Anat 194:31-35, (2011)Til toppen

Orton DC, Makowiecki D, de Roo T, Johnstone C, Harland J, Jonsson L, Heinrich D, Enghoff IB, Lougas L, Van Neer W, Ervynck A, Hufthammer AK, Amundsen C, Jones AK, Locker A, Hamilton-Dyer S, Pope P, MacKenzie B, Richards M, O'Connell TC, Barrett JH. Stable isotope evidence for Late Medieval (14th-15th C) origin of the eastern Baltic cod (Gadus morhua) fishery. PloS One 6(11): 1-15. (2011)

Orlando L, Ginolhac A, Raghavan M, Vilstrup J, Rasmussen M, Magnussen K, Steinmann KE, Kapranov P, Thompson JF, Zazula G, Froese D, Moltke I, Shapiro B, Hofreiter M, Al-Rasheid KAS, Gilbert MTP, Willerslev E. True single-molecule DNA sequencing of a Pleistocene horse bone. Genome Res. 21: 1705-1719, (2011)

Pantmann P, Enghoff IB. På dybt vand. Skalk 2011(1): 12-15

Rasmussen M, Guo X, Wang Y, Lohmueller KE, Rasmussen S, Albrechtsen A, Skotte L, Lindgreen S, Metspalu M, Jombart T, Kivisild T, Zhai W, Eriksson A, Manica A, Orlando L, De La Vega F, Tridico S, Metspalu E, Nielsen K, Ávila-Arcos MC, Moreno-Mayar JV, Muller C, Dortch J, Gilbert MTP, Lund O, Wesolowska A, Karmin M, Weiner LA, Wang B, Li J, Tai S, Xiao F, Hanihara T, van Driem G, Jha AR, Ricaut F-X, de Knijff P, Migliano AB, Gallego-Romero I, Kristiansen K, Lambert DM, Brunak S, Forster P, Brinkmann B, Nehlich O, Bunce M, Richards M, Gupta R, Bustamante C, Krogh A, Foley RA, Lahr MM, Balloux F, Sicheritz-Pontén T, Villems R, Nielsen R, Jun W, Willerslev E. An Aboriginal Australian genome reveals separate human dispersals into Asia. Science 334:94-98, (2011)

Razgour O, Clare EL, Zeale MRK, Schnell IB, Rasmussen M, Gilbert MTP, Jones. High-throughput sequencing offers insight into mechanisms of resource partitioning in cryptic bat species. Ecology and Evolution, 1, 556-70 (2011)

Rehn N, Filatova OA, Durban JW, Foote AD. Cross-cultural and cross-ecotype production of a killer whale ‘excitement' call suggests universality. Naturwissenschaften 98:1-6, (2011)

Stouge S, Christiansen JL, Harper, DAT, Houmark-Nielsen M, Kristiansen K, MacNiocaill C, Buchardt-Westergaard, B. Neoproterozoic (Cryogenian-Ediacaran) deposits in East and North-East Greenland. Geological Society, London, Memoirs 2011; v. 36; p. 581-592, doi: 10.1144/M36.56

Takamiya M, Ozen A, Rasmussen M, Alter T, Gilbert MTP, Ussery DW, Knøchel S. Genome Sequence of Campylobacter jejuni strain 327, a strain isolated from a turkey slaughterhouse. Std. gen. sci., 4, 113-122, 2011

Takamiya M, Ozen A, Rasmussen M, Alter T, Gilbert MTP, Ussery DW, Knøchel S. Genome Sequences of Two Stress-Tolerant Campylobacter jejuni Poultry Strains, 305 and DFVF1099. J. Bacterology, 193, 5546-7. 2011

Tange O. GNU Parallel - The Command-Line Power Tool. ;login: The USENIX Magazine, February 2011:42-47

Tange O. GNU SQL - A Command Line Tool for Accessing Different Databases Using DBURLs. ;login: The USENIX Magazine, April 2011:29-32

Ukkonen P, Aaris-Sørensen K, Arppe L, Clark PU, Daugnora L, Lister AM, Lõugas L, Seppä H, Sommer RS, Stuart AJ, Wojtal P, Zupins I. Woolly mammoth (Mammuthus primigenius Blum.) and its environment in northern Europe during the last glaciation. Quat. Sci. Rev. 30: 693-712, (2011)

Van Doorn N, Wilson A, Willerslev E, Gilbert MTP. Bone marrow and bone as a source for post-mortem RNA. J. Forensic Science 56:720-725, (2011)

Vilstrup JT, Ho SYW, Foote AD, Morin PA, Kreb D, Krützen M, Parra GJ, Robertson KM, de Stephanis R, Verborgh P, Willerslev E, Orlando L, Gilbert MTP. Mitogenomic phylogenetic analyses of the Delphinidae with an emphasis on the Globicephalinae. BMC Evol. Biol. 11:65, (2011)

Waters MR, Stafford Jr. TW, McDonald GH, Gustafson C, Rasmussen M, Cappellini E, Olsen JV, Szklarczyk D, Juhl Jensen L, Gilbert MTP, Willerslev E. Pre-Clovis mastodon hunting 13,800 years ago at the Manis site, Washington: Implications for explaining the extinction of megafauna at the end of the Pleistocene. Science 334:351-353, (2011)

White NE, Phillips MJ, Gilbert MTP, Alfaro-Nuñes A, Willerslev E, Mawson PR, Spencer PBS, Bunce M. The evolutionary history of Cockatoos (Psittaciformes: Cacatuidae). Mol. Phyl. Evol. 59:615-622, (2011)

Wen J, Parker BJ, Jacobsen A, Krogh A. MicroRNA transfection and AGO-bound CLIP-seq data sets reveal distinct determinants of miRNA action. RNA, 17(5):820–834, May 2011

Wiig Ø, Heide-Jørgensen MP, Laidre KL, Garde E, Reeves RR. Geographic variation in cranial morphology of narwhals (Monodon monoceros) from Greenland and the eastern Canadian Arctic. Polar Biology 35:63-71Til toppen

Publications 2010

Alley RB, Andrews JT, Brigham-Grette J, Clarke GKC, Cuffey KM, Fitzpatrick JJ, Funder S, Marshall SJ, Miller GH, Mitrovica JX, Muhs DR, Otto-Bliesner BL, Polyak L. History of the Greenland Ice Sheet: Paleoclimatic insights. Quaternary Science Reviews 29, 1728-1756, (2010) (PR)(CO)

Axelsson E, Albrechtsen A, van AP, Li L, Megens HJ, Vereijken ALJ, Crooijmans RPMA, Groenen MAM, Ellegren H, Willerslev E, Nielsen R. Segregation distortion in chicken and the evolutionary consequences of female meiotic drive in birds. Heredity 105, 290-298 (2010)

Binladen J. and Willerslev E. "Why study ancient DNA damage?" J. Nordic Archaeological Science 17, 11-14 (2010)

Campos PF, Willerslev E, Mead JI, Hofreiter M, Gilbert MTP. Molecular identification of the extinct mountain goat, Oreamnos harringtoni (Bovidae). Boreas 39, 18-23 (2010)

Campos P, Willerslev E, Sher A, Orlando L, Axelsson E, Tikhonov A, Aaris-Sørensen K, Greenwood A, Kahlke R-D, Kosintsev P, Krakhmalnaya T, Kuznetsova T, Lemey P, MacPhee R, Norris CA, Shephard K, Suchard MA, Zazula GD, Shapiro B, Gilbert MTP. Ancient DNA analyses exclude humans as the driving force behind late Pleistocene musk ox (Ovibos moschatus) population dynamics. Proc. Natl. Acad. Sci. USA. 105:8327- 8332, (2010)

Campos PF, Kristensen T, Orlando L et al. Ancient DNA sequences point to a large loss of mitochondrial genetic diversity in the saiga antelope (Saiga tatarica) since the Pleistocene. Mol. Ecol. 19 (22): 4863-4875, (2010)

Campos PF, Sher A, Mead JI et al. Clarification of the taxonomic relationship of the extant and extinct ovibovids, Ovibos, Praeovibos, Euceratherium and Bootherium. Quaternary Science Reviews 29, 2123-2130, (2010)

Cappellini E, Gilbert MTP, Geuna F, Fiorentino G, Hall A, Thomas-Oates J, Ashton P Ashford D, Arthur P, Campos P, Kool J, Willerslev E, Matthew M. A multidisciplinary study of archaeological grape seeds. Naturwissenschaften 97, 205-217 (2010)

Charlier P, Huynh-Charlier I, Poupon J, Keyser C, Lancelot E, Favier D, Vignal J, Sorel P, Chaillot P, Boano R, Grilleto R, Delacourt S, Duriez J, Loublier Y, Campos PF et al. Multidisciplinary medical identification of a French king's head (Henri IV). BMJ, 341, (2010)

Charlier P, Poupon J, Eb A, De Mazancourt P, Gilbert T, Huynh-Charlier I, Loublier Y, Verhille AM, Moulheirat C, Patou-Mathis M, Robbiola L, Montagut R, Masson F, Etcheberry A, Brun L, Willerslev E, Lorin de la Grandmaison G, Durigon M. The 'relics of Joan of Arc': A forensic multidisciplinary analysis. Forensic Sci. Int. 194, e9-15 (2010)

Ehrlich H, Deutzmann R, Brunner E, Cappellini E, Koon H, Solazzo C, Yang Y, Ashford D, Thomas-Oates J, Lubeck M, Baessmann C, Langrock T, Hoffmann R, Wörheide G, Reitner J, Simon P, Tsurkan M, Ereskovsky AV, Kurek D, Bazhenov VV, Hunoldt S, Mertig M, Vyalikh DV, Molodtsov SL, Kummer K et al. Mineralization of the metre-long biosilica structures of glass sponges is templated on hydroxylated collagen. Nature Chemistry 2: 1084–1088, (2010)

Funder S, Kjeldsen KK, Kjær KH. The Greenland ice sheet during the last 300,000 years: a review. Development in Quaternary Sciences (Ed. Ehlers). (2010). 23 pages

Gotfredsen AB. Faunal Remains from the Wollaston Forland – Clavering Ø Region, Northeast Greenland - Thule Culture Subsistence in a High Arctic Polynya and Ice-edge Habitat. Geografisk Tidsskrift-Danish Journal of Geography 110(2): 175-200. (2010)Til toppen

Gregersen LH, Jacobsen AB, Frankel LB, Wen J, Krogh A, Lund AH. MicroRNA-145 targets YES and STAT1 in colon cancer cells. PLoS One. 2010 Jan 21;5(1):e8836

Houmark-Nielsen, M. Extent, age and dynamics of Marine Isotope Stage 3 glaciations in the southwestern Baltic Basin. Boreas 39, 343-359. 2010

Jacobsen A, Wen J, Marks DS, Krogh A. Signatures of RNA binding proteins globally coupled to effective mcroRNA target sites. Genome Res. 2010 Aug;20(8):1010-9. Epub 2010 May 27

Jacobsen A, Krogh A, Kauppinen S, Lindow M. miRMaid: a unified programming interface for microRNA data resources. BMC Bioinformatics. 2010 Jan 14;11:29

Jakobsson M, Long A, Ingólfsson Ó, Kjær KH, Speilhagen RF. New insights on Arctic Quaternary climate variability from palaeo-records and numerical modelling. Quat. Sci. Rev. 29: 3349, (2010)

Lalueza-Fox C, Rosas A, Estalrrich A, Gigli E, Campos PF et al. Genetic evidence for patrilocal mating behavior among Neandertal groups. Proc.Natl. Acad. Sci. (2010) doi:10.1073/pnas.1011553108

Lari M, Rizzi E, Milani L, Corti G, Balsamo C, Vai S, Catalano G, Pilli E, Longo L, Condemi S, Giunti P, Hanni C, De Bellis G, Orlando L, Barbujani G, Caramelli D. The microcephalin ancestral allele in a Neanderthal individual. PloS ONE 5(5):e10648, (2010)

Larsen NK, Kjær KH, Funder S, Möller P. van der Meer JJM, Schomacker A, Linge H, Darby DA. Late Quaternary glaciation history of northernmost Greenland – evidence of shelf-based ice. Quat. Sci. Rev. 29: 3399, (2010)

Lira J, Linderholm A, Olaria C, Brandström Durling M, Gilbert MT, Ellegren H, Willerslev E, Lidén K, Arsuaga JL, Götherström A. Ancient DNA reveals traces of neolithic and Bronze age lineages in modern Iberian horses. Mol. Ecol. 19, 64-78 (2010)

Lorenzen ED, Willerslev E. King Tutankhamun’s Family and Demise. Journal of the American Medical Association (JAMA) 303, 2471 (2010)

Miller GH, Brigham-Grette J, Alley RB, Anderson L, Bauch HA, Douglas MSV, Edwards ME, Elias SA, Finney BP, Fitzpatrick JJ, Funder S, Herbert TD, Hinzman LD, Kaufman DS, MacDonald GM, Polyak L, Robock A, Serreze MC, Smol JP, Spielhagen R, White JWC, Wolfe AP, Wolff EW. Temperature and precipitation history of the Arctic. Quat. Sci. Rev. 29, 1679-1715, (2010) (PR)(CO)

Millard A, Schroeder H. True British Sailors: A comment on the origin of the men of the Mary Rose. Journal of Archaeological Science 37: 680-682, (2010)

Morin PA, Archer FA, Foote AD, Vilstrup J, Allen EA, Wade P, Durban J, Parsons K, Pitman R, Li L, Bouffard P, Nielsen SCA, Rasmussen M, Willerslev E, Gilbert MTP, Harkins T. Complete mitochondrial genome phylogeographic analysis of killer whales (Orcinus orca) indicates multiple species. Genome Res. 20, 908-916, (2010)

Moro ML, Collins MJ, Cappellini E. Alzheimer’s disease and amyloid β-peptide deposition in the brain: a matter of ‘aging’? Biochem. Soc. Trans. 38(2): 539-44, (2010)

Mourier T, Willerslev E. Large-scale transcriptome data reveals transcriptional activity of fission yeast LTR retrotransposons. BMC Genomics 11, 167 (2010)Til toppen

Möller P, Larsen NK, Kjær KH, Funder S, Schomacker A, Linge A. Fabel D. Early to middle Holocene valley glaciations on northernmost Greenland. Quat. Sci. Rev. 29: 3379, (2010) (PR)(CO)

Nygaard S, Braunstein A, Malsen G, Van Dongen S, Gardner PP, Krogh A, Otto TD, Pain A, Berriman M, McAuliffe J, Dermitzakis ET, Jeffares DC. Long- and short-term selective forces on malaria parasite genomes. PLoS Genet. 2010 Sep 9;6(9). pii: e1001099

Oskam CL, Haile J, McLay E, Rigby P, Allentoft ME, Olsen ME, Bengtsson C, Miller GH, Schwenninger JL, Jacomb C, Walter R, Baynes A, Dortch J, Parker-Pearson M, Gilbert MT, Holdaway RN, Willerslev E, Bunce M. Fossil avian eggshell preserves ancient DNA. Proc. Royal Soc. Lon. B. 277, 1991-2000 (2010)

Papageorgopoulou C, Rentsch K, Raghavan M, Hofmann MI, Colacicco G, Gallien V, Bianucci R, Rühli F. Preservation of cell structures in a medieval infant brain: a paleohistological, paleogenetic, radiological and physico-chemical study. Neuroimage 50(3): 893-901, (2010)

Polyak L, Alley RBR, Andrews JT, Brigham-Grette J, Cronin TM, Darby DA. Dyke AS, Fitzpatrick J, Funder S, Holland M, Jennings AE, Miller GH, O’Regan M, Savelle J, Serreze M, St. John K, White J, Wolff E. History of sea ice in the Arctic. Quat. Sci. Rev. 29, 1757-1778, (2010) (PR)(CO)

Raghavan M, McCullagh JS, Lynnerup N, Hedges RE. Amino acid delta 13C analysis of hair proteins and bone collagen using liquid chromatography/isotope ratio mass spectrometry: paleodietary implications from intra-individual comparisons. Rapid Communications in Mass Spectrometry 24(5): 541-548, (2010)

Rasmussen M, Li Y, Lindgreen S, Pedersen JS, Albrechtsen A, Moltke I, Metspalu M, Metspalu E, Kivisild T, Gupta R, Bertalan M, Nielsen K, Gilbert MTP, Wang Y, Raghavan M, Campos PF, Kamp HM, Wilson AS, Gledhill A, Tridico S, Bunce M, Lorenzen ED, Binladen J, Guo X, Zhao J, Zhang X, Zhang H, Li Z, Chen M, Orlando L, Kristiansen K, Bak M, Tommerup N, Bendixen C, Pierre TL, Grønnow B, Meldgaard M, Andreasen C, Dedorova SA, Osipova LP, Higham TFG, Bronk Ramsay C, Hansen T v O, Nielsen FC, Crawford MH, Brunak S, Sicheritz-Pontén T, Villems R, Nielsen R, Krogh A, Wang J, Willerslev E. Ancient human genome sequence of an extinct Palaeo-Eskimo. Nature 463: 757-762, (2010)

Rodriguez M, Edsgard D, Sarfraz H, Alquezar D, Rasmussen M, Gilbert MTP, Nielsen B, Bartels D, Mundy J. Transcriptomes of the desiccation tolerant resurrection plant Craterostigma plantagineum. The Plant J. 63, 212-228 (2010)

Schlumbaum A, Campos PF, Volken S et al. Ancient DNA, a Neolithic legging from the Swiss Alps and the early history of goat. J. Archaeol. Sci. 37, 1247-1251, (2010)

Schnell IB, Fraser M, Willerslev E, Gilbert MTP. Characterisation of insect and plant origins using DNA extracted from small volumes of bee honey. Arthropod-Plant Interactions 4, 107-116 (2010)

Sønstebrø JH, Gielly L, Brysting AK, Elven R, Edwards M, Haile J, Willerslev E, Croissac E, Rioux D, Sannier J, Taberlet P, Brochmann C. Using next-generation sequencing for molecular reconstruction of past Arctic vegetation and climate. Mol. Ecol. Res. 10, 1009-1018 (2010)

Willerslev E. On the Brink of Extinction. Trends. Ecol. Evol. 25, 265 – 266 (2010)Til toppen

Publications 2009

Allentoft ME, Scuster SC, Holdaway RN, Hale M, McLay E, Oskam C, Gibert MTP, Spencer P, Willerslev E, Bunce M. Identification of microsatellites from an extinct moa species using high throughput sequence data. BioTechniques 3,195-200, (2009)

Bartoli L, Fariselli P, Krogh A, Casadio R. CCHMM_PROF: a HMM-basedcoiled-coil predictor with evolutionary information. Bioinformatics, 2009 Nov 1;25(21):2757-63

Benediktsson ÍÖ, Ingólfsson Ó, Schomacker A, and Kjær KH. Formation of submarginal and proglacial end moraines: implications of iceflow mechanism during the 1963-64 surge of Brúarjökull, Iceland. Boreas 38, 440-457, (2009)

Bunce M, Worthy TH, Phillips MJ, Holdaway RN, Willerslev E, Haile J, Shapiro B, Scofield RP, Drummond A, Kamp PJJ, Cooper A. The evolutionary history of the extinct ratite moa and New Zealand Neogene paleogeography. Proc. Natl. Acad. Sci. USA. 106, 20646-20651 (2009)

Campos PF, Willerslev E and Gilbert MTP. Isolation of DNA from ancient samples. In: Handbook of nucleic acids purification. (Ed. Don Liu), 441-461 (2009)

Enghoff, I.B. Fiskeri fra jernalderbopladsen Nørre Hedegård. Pp. 236-246 in Runge, M. (ed.): Nr. Hedegård. En nordjysk byhøj fra ældre jernalder. Jysk Arkæologisk Selskabs Skrifter. Højbjerg. (2009)

Enghoff, I.B. Dyreknogler fra Ronæs Skov-bopladsen. Pp. 243-271 in: Andersen, S.H. (ed.) Ronæs Skov. Marinarkæologiske undersøgelser af kystboplads fra Ertebølletid. Jysk Arkæologisk Selskab. (2009)

Foote AD, Newton J, Piertney SB, Willerslev E, Gilbert MTP. Ecological, morphological and genetic divergence of sympatric North Atlantic killer whale populations. Mol. Ecol. 18, 5207-5217 (2009)

Funder SV, Michelutti N, Simonetti A, Briner J, Creaser RA, Wolfe AP. Temporal trends of pollution Pb and other metals in east-central Baffin Island inferred from lake sediment geochemistry. Science of the Total Environment. 2009 ; vol. 407, 7-7-2009. s. 5653-5662

Gigli E, Rasmussen M, Civit S, Rosas A, de la Rasilla M, Fortea J, Gilbert MTP, Willerslev E, Lalueza-Fox C. An improved PCR method for endogenous DNA retrieval in contaminated Neandertal samples based on the use of blocking primers. J. Archaeol. Sci. 36, 2676-2679 (2009)

Gilbert MTP, Jenkins DL, Higham TFG, Rasmussen M, Malmström H, Svensson EM, Sanchez JJ, Cummings LS, Yohe II RM, Hofreiter M, Götherström A, Willerslev E. Response to Comment on "Pre-Clovis Human Coprolites in Oregon, North America” by Poinar H. et al. Science 325, 148 (2009)

Haile J, Froese DG, MacPhee RDE, Roberts RG, Arnold LJ, Reyes AV, Rasmussen M, Nielsen R, Brook BW, Robinson S, Demuro M, Gilbert MTP, Munch K, Austin JJ, Cooper A, Barnes I, Möller P, Willerslev E. Ancient DNA reveals late survival of mammoth and horse in interior Alaska. Proc. Natl. Acad. Sci. USA. 106, 22352-22357 (2009)

Hebsgaard MB, Arneborg J, Gilbert MTP, Heyn P, Allentoft ME, Bunce M, Munch K, Schweger C, Willerslev E. “The Farm Beneath the Sand” – An Archaeological Case Study on Ancient “Dirt” DNA. Antiquity 83, 430-444 (2009)

Houmark-Nielsen M. MIS 3 interstadial climate and rapid ice advances in the Baltic Basin. Swedish Nuclear Fuel and Waste Management. SKB-P- 09-10, (2009), Stockholm

Houmark-Nielsen M. Extent, age and dynamics of Marine Isotope Stage 3 glaciations in the southwestern Baltic Basin. Boreas vol.39, 10.1111/j.1502-3885.2009.00136.x.ISSN 0300-9483 (2009)Til toppen

Steeman, M.E. A new baleen whale from the Late Miocene of Denmark and early mysticete hearing. Palaeontology, 52, 1169–1190 (2009)

Katzourakis A, Gifford RJ, Tristem M, Gilbert MTP, Pybus OG. The macroevolution of complex retroviruses. Science 325:1512 (2009)

King GA, Gilbert MTP, Willerslev E, Collins MJ, Kenward HK. Recovery of DNA from archaeological insect remains: first results, problems and potential. J. Arch. Sci. 36, 1179 1183 (2009)

Krüger J, Kjær KH, Schomacker A. Dead-ice Environments: a Landsystems Model for a Debris-charged Stagnant Lowland Glacier Margin, Kötlujökull. In: The Mýrdalsjökull ice cap, Iceland: glacial processes, sediments and landforms on an active volcano. (Ed. by Schomacker A et al.). Developments in Quaternary Science 13 (2009). Elsevier, Amsterdam. Pp. 105-126

Krüger J, Schomacker A, Kjær KH. The Mýrdalsjökull Ice Cap, Iceland: Glacial Processes, Sediments and Landforms on an Active Volcano: An Introduction. In: The Mýrdalsjökull ice cap, Iceland: glacial processes, sediments and landforms on an active volcano. (Ed. by A. Schomacker et al.). Developments in Quaternary Science 13 (2009). Elsevier, Amsterdam. Pp. 1-3

Malmström H, Gilbert MTP, Thomas MG, Brandström M, Storå J, Molnar P, Andersen PK, Bendixen C, Holmlund G, Götherström A, Willerslev E. Ancient DNA Reveals lack of Continuity between Neolithic Hunter-gatherers and Contemporary Scandinavians. Curr. Biol. 19, 1758 – 1762 (2009)

Mourier T, Willerslev E. Retrotransposons and non-protein coding RNAs. Brief Funct. Genomic Proteomic 8, 493-501 (2009)

Rasmussen M, Cummings LS, Gilbert MTP, Bryant V, Smith C, Jenkins DL, Willerslev E. Response to Comment on "Pre-Clovis Human Coprolites in Oregon, North America” by Goldberg P. et al. Science 325, 148 (2009)

Schomacker, A., Kjær, K.H. & Krüger, J. Subglacial Environments, Sediments and Landforms at the Margins of Mýrdalsjökull. In: The Mýrdalsjökull ice cap, Iceland: glacial processes, sediments and landforms on an active volcano. (Ed. by Schomacker A et al.). Developments in Quaternary Science 13 (2009). Elsevier, Amsterdam. Pp. 127-144

Schroeder H, O'Connell TC, Evans J, Shuler K and Hedges REM. Trans-Atlantic slavery: Isotopic evidence for forced migration to Barbados. American Journal of Physical Anthropology 139: 547-557, (2009)Til toppen

Solazzo C, Fitzhugh W, Loring S, Cappellini E, Gilbert MTP, Willerslev E, Penkman K, Collins MJ. What’s in the pot? Multiple approaches to the analysis and interpretation of organi residues in ceramics from the Iñupiat culture, Point Barrow, Alaska. Antiquity 83, 430–444 (2009)

Steeman ME, Hebsgaard MB, Fordyce RE, Ho SYW, Rabosky DL, Nielsen R, Rahbek C, Glenner H, Sørensen MV, Willerslev E. Radiation of Extant Cetaceans Driven by Restructuring of the Oceans. Syst. Biol. 58, 573-585 (2009)

Thomsen PF, Elias S, Gilbert MTP, Munch K, Kuzmina S, Sher A, Haile J, Holdaway R, Willerslev E. Non-destructive sampling of ancient insect DNA. PLoS ONE 4, e5048 (2009)

Valen E, Sandelin A, Winther O, Krogh A. Discovery of regulatory elements is improved by a discriminatory approach. PLoS Comput Biol. 2009 Nov;5(11):e1000562. Epub 2009 Nov 13

van der Meer JJM, Kjær KH, Krüger J, Rabassa J, Kilfeather AA. Under pressure: Clastic dykes in glacial settings. Quaternary Science Reviews 28, 708-720. (2009)

van der Meer JJM, Carr SJ, Kjær KH. Mýrdalsjökull’s Forefields Under the Microscope. The Micromorphology of Meltout and Subglacial Tills. In: The Mýrdalsjökull ice cap, Iceland: glacial processes, sediments and landforms on an active volcano. (Ed. by Schomacker A et al.). Developments in Quaternary Science 13, (2009). Elsevier, Amsterdam. Pp. 159-180

Weinstock J, Prieto A, Shapiro B, Gilbert MTP, Marin JC, Gonzalez B, Willerslev E. The Late Pleistocene distribution of vicuñas (Vicugna vicugna) and the “extinction” of the gracile llama (“Lama gracilis”): new molecular data. Quat. Sci. Rev. 28, 1369-1373 (2009)

Willerslev E, Gilbert MTP, Binladen B, Ho SYW, Campos PF, Ratan A, Tomsho LP, da Fonseca RR, Sher A, Kuznetsova TV, Nowak-Kemp M, Roth TL, Miller W, Schuster SC. Analysis of complete mitochondrial genomes from extinct and extant rhinoceroses reveals lack of phylogenetic resolution. BMC Evol. Biol. 9, 95 (2009)

Aaris-Sørensen K. Diversity and dynamics of the mammalian fauna in Denmark throughout the last glacial-interglacial cycle, 115-0 kyr BP. Fossils and Strata 57: 1-59, (2009)Til toppen